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Hi,

I have files with lines that look like

HSQ1008:141:D0CC8ACXX:3:1106:17255:124378 163 chr14

I'm wondering how I can output a file that appends /1 if the second column is 99 or...

Hi, I have a file that looks something like the following:

>IGHV4-4*02
caggtgcagctgcaggagtcgggcccaggactggtgaagccttcggggaccctgtcc
ctcacctgcgctgtctctggtggctccatcagcagtagtaactggtggagt...

Thank you!

I have a follow-up question, however. How should I modify the above if I have files with spaces and dashes instead? For instance,

008 - Great Good Fine Ok - Not Going Home
009 -...

Hi,

I have files in a folder that I would like all renamed without the preceding number and parenthesis. For example, I have files of the name

08) Great Good Fine Ok - Not Going Home
09)...

Yes, sorry I did mean $1, $2. I think I'm trying to do something like


awk '{ print $1, $2}'|
while read A B;
do
echo $A, $B
if [ "$B" -eq "16" ];
then
grep -A 1 $A $1 | python...

Sorry, another follow-up.

In


awk '{ print $1}' |
while read num
do
foo "$num"
done

supposing I did
awk '{ print $1 $2}' |
instead of awk '{ print $1}' |

where I only want...

Yes, it indeed does. I am running on OS X Yosemite.

Hi,

If I have a file of something like


@hg19_gold_AL122127.6-131160
GCTTCATCATGCATGGATAGGCTGGCGCCTTTCCTGAGGCCATATGCCGATGGATATG
@hg19_gold_AL122127.6-131159...

Thank you!

I suppose I'm asking if I have a bash function called foo(), how do I call foo() on every element after the first step of filtering all strings between > and *. Thanks!

Hi,

I have a file that looks something like

>1-18*anc...

Hi,

If I have a list called list.txt and on each line theres a string of the form something*blah, how do I remove everything after the * for each item? Thanks!