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Hi experts,
I have file which looks like :
chr1 2984741 2985289 chr1 2984289 2985289 -1000
chr1 54519111 54519244 chr1 54519111 54520111 -133...

Thanks for the concern...attached is the file containing the columns as I have them with my tool....my problem is not with the second column ...the issue is the third column. This should reflect the...

Hi,
I need help in awk to decipher the exact overlapping numbers within the columns in fileA that occur in fileB. I am aware of many tools in awk, but am struggling to find a solution.
Can...

I think it does not work.....though I had thought so...how can I attach the files I want to post ?

awk ' NR == FNR {val[$1]=$2; next} $1 in val {print $1, val[$1], $2} ' file1 file2
By overlap I mean the designate range.
Thank you so much for responding .

Hi,

I have 2 files containing columns like these:

column in file A
R 123 145

column in file B
R 135 157

and I want an output which tells me the exact overlap between the numbers...

Thanks....no I did not try ....new to awk so trying to learn the one liners.
Thanks for your response.

Hi,
I want to write a script in awk which counts the difference between two numbers in a column. For example, I have a file which has entries like these :
A 12345 678910
and I want to find...

---------- Post updated at 10:43 AM ---------- Previous update was at 10:42 AM ----------

Hi,

I am trying to find out overlapping regions in two given files, so I wrote a awk script
awk...

Hi,
The input files are attached

Hi,

I wrote an awk script to compare intervals between two files
awk 'FNR==NR {a[$1]; next} $1 in a'

My input files I am comparing for overlaps are arranged like this:
chr1 23110 23140...

Surprisingly the Tabs have disappeared in the output file...how to put them back ?

My File has different entries in every line.
chr1 6845635 6880240
chr1 7151431 7309550
chr1 57756838 58115263
chr1 85824530 85961848
chr1 172100428 ...

Hi,

I have a file which has regions in numbers like:
chr1 6845635 6880240
and I want an awk script which extracts only 1000 numbers from the end of the 2nd column. The output should then...