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Dear Corona688,

I really thank you for your help and patience in troubleshooting the problem.
It was indeed a fortran problem and as soon as I installed gfortran, the program started to work....

Dear All,

Thank you for your reply. I deleted all the installed packages from mfold and tried to install afresh.

Untar the files in /usr/local

As a superuser, issued the following commands...

Dear Corona688,

Thank you for your reply. If it didn't gave you any errors while building, then does it means that I have to install any C-libraries or compilers?

I am attaching the config.log...

Dear Corona688,
This is a program called mfold-3.6 which I downloaded from http://mfold.rna.albany.edu/?q=mfold/download-mfold and am trying to install on OpenSuse linux (Linux 3.11.10-21-desktop...

Dear All,
I am trying to install a program in Opensuse linux and while issuing the 'make' command, its showing me an error /bin/sh: C: command not found

Kindly help me to troubleshoot the...

Dear Corona688,
I first checked with a single operation including other command-line options and then put it into the loop for all the sequences. So far working good :)
Thanks again.
Regards

Dear Corona688,
You are awesome and really really thanks for your help. The command line options worked like charm. Below is the sample script i put together for the automatic alignment:
...

Dear Corona688, the program is executing successfully using the above commands. Below is the terminal output:

[host@localhost temp]$ ma <<EOF
H_X.fas
auto
n
/home/multalign/dna.tab

n
msf...

Extremely sorry, this is coming from the code icon from the text editor.
Again apologize.

Dear Corona688,
Below the word by word execution of program from terminal: I have the executable set in the path:


[host@localhost temp]$ ma
Multalin version 5.4.1
Copyright I.N.R.A. France...

Dear Corona688,
Thank you for your reply. I incorporated the changes but it seems its not able to find the data file ( although i put explicit path name).
Below is the code and error:
#!/bin/bash...

Dear Users,

I have installed a standalone program to do multiple sequence alignment which takes user parameters to run the program. I have multiple sequence files and want to automate this process...

Hello bartus11,
Thank you so much for the help. The script is working like charm. With so little knowledge about the scripting I would have never figured that out.
I am trying to learn some...

Hello bartus11,

Thanks for your reply. I am attaching a zip files containing the folders and respective bash script and a dummy Pymol log file.

Thanks once again for the help :)

cat <<EOF >log.pml
...

Thanks sea,
Sorry to disturb you so much.
"out_Frog-mol-ryan_ligand_*.pdbq" is not getting translated in the log.pml file so the visualizer is not able to understand the "*" explicitly.

Let me...

Hello sea,
Thank you for your help. One small problem, the output files are named out_Frog-mol-ryan_ligand_05.pdbqt so if I set as "$f/out_$f*.pdbqt" its not able to find the files.
Kindly...

Hello All,

I am trying to write a small bash script to make my life easier for an analysis. I have multiple folders and inside them are 10 output files with an extension .pdbqt What I am trying to...