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Thank you very much! This has all been extremely helpful.

My apologies, I didn't intend to be vague. That summary is correct. This is an aligned Next-gen sequencing file that I am attempting to manipulate. There is a family of repeat genes on chr3 in the...

I want chr3 and additionally ONLY those in the range 112,937,439 - 113,437,438

I am trying to extract specific information from a large *.sam file (it's originally 28Gb).

I want to extract all lines that are on chr3 somewhere in the range of 112,937,439-113,437,438.

Here...

I am processing RNA-seq data files that have been aligned using RUM. One of the output files is a *.sam that includes:

Unique alignments
Non-unique alignments
original read files

I want to...