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Sweet, thank you! I just changed it slightly so that it only adds the backslashes for lines with text in them:
awk '!/^\\begin/&&!/^$/&&!/^\\end/{$0=$0"\\\\"}1' filename

I'd like to write up notes in a relatively readable format and then use a shell script to add LaTeX formatting. Specifically, I'm trying to figure out how to add the LaTeX newline character (\\) to...