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Hi tyler,
I used your instructions as follows:
C:\Perl>perl -F"\t" -lane 'BEGIN {@hdr = qw(chromo pos refalleles.SampleA refAllele.SampleA refCount.SampleA refFreq.SampleA altAllele.SampleA...

hi Skrynesaver. Since your post was so helpful to gimley, I was wondering if you would be kind enough to help me out. I have three files each with a few columns. I want to merge them and produce an...

Hi birei,
currently your script merges the files in a vertical fashion:

chromo pos ref alleles.SampleA refAllele.SampleA refCount.SampleA refFreq.SampleA altAllele.SampleA altCount.SampleA...