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thanks for your help but I have to do this problem solely by using perl script. I am new learner in perl so please help me to identify the problem in code written by me.

I write a program to find a palindromic region in given sequences. but it dosen't seems to be run well. please give me your suggestions

INPUT: AGCTAGCTCGAAGGTAG
code is
here

#!/usr/bin/perl ...

thank you... :)

thanks. but it dose not print next lines of input file, it concatenated form this code extract first line only. I wish to get result as


~dta.yunm...

I have datafile like
~dta.yunm
shhshsgggssssjsksjs
sggsjshsjsjssss
shshshhshshshs


i wish to take only first line and all other lines in concatenated form in second line what should I do???
...