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Thanks for the explanations, I'll try to find out some nice documentation to better understand associative arrays, my knowledge are not that broad in awk but as i'm happy with the results a should...

Dear Mirni,
Thanks for your quick answer and the nice solution
It work pretty well and very fast, I just had to add a line with column header and that's all.
I'm wondering if it's possible to tune...

Hi
I have a tab separated file with reads mappings of more than 2 million reads> the file is sorted by ID and looks like the following:

SeqID Seq FreqSeq PosSeq...