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"join" did the trick - although in a very incompetent way:

join -a1 -a2 -1 2 -2 2 -o 0,1.1,2.1 -e "0" ${genelist001} ${genelist002} | join -a1 -a2 -1 1 -2 2 -o 0,1.2,1.3,2.1 -e "0" -...

Hi,

I have nine files looking similar to file1 & file2 below.

File1:
1 ABCA1
1 ABCC8
1 ABR:N
1 ACACB
1 ACAP2
1 ACOT1
1 ACSBG
1 ACTR1
1 ACTRT
1 ADAMT
...