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Forum: Shell Programming and Scripting 02-12-2011

Scanning alignment and "extracting" blocks

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Here's a start: cat Infile.txt | awk 'NR ==...

Here's a start:

cat Infile.txt | awk 'NR == 1 {numseq = $1; len= $2; blocksize=40; RS=""; FS="\n"; for (i=1;i<=numseq;i++) sqx[i]=""; next;}
NR != 1 {for (i=1;i<=numseq; i++) sqx[i]=sqx[i] $i;}...

Forum: Shell Programming and Scripting 02-12-2011

Scanning alignment and "extracting" blocks

2,438

Posted By

The last column of sequence data in block1 is the...

The last column of sequence data in block1 is the same as the first column of block2. Please clarify the desired output.

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