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Hai,
How to remove the repeated 'Chr's in different sequences. In the given example, Chr11 is repeated in two samples with the same number i.e. 100949523. How to remove one of the entry in any of...

The given file consists of two tags i.e., <free-energy> and <position> tag. I want the output like this. The tag <length> is not required to consider.

(General format of output)
free-energy no....

The given file consists of two tags i.e., <free-energy> and <position> tag. I want the output like this. The tag <length> is not required to consider.

(General format of output)

free-energy no....

How to call a perl script in shell program / shell scripting.

PLS HELP ME

My folder contains many files with .ps extensions. How to convert all of these to .pdf at a time using a shell script /command.

Help me.

Hai,
How to remove the repeated 'Chr's in different sequences. In the given example, Chr19 is repeated in two samples
with the same number i.e. +52245923. How to remove one of the entry in any of...

Thanks a lot for this script. It worked well with small data file. My datafiles file1 and file2 contains minimum 370MB. when I execute this command, after 5 minutes i am getting $ prompt without any...

I have two input files (given below) and to compare each line of the File1 with each line of File2 starts with '>sample1'. If a match occurs and that matched line in the File2 contains another line...

Thank u very much for your reply. I used as u specified "$line" in samtools command like samtools faidx Bos_taurusUMD3.fa "$line";

It is giving out like this. Sequence was not given. it displays ...

Thank u very much for your reply. I used as u specified "$line" in samtools command like samtools faidx Bos_taurusUMD3.fa "$line";

It is giving out like this. Sequence was not given. it displays ...

Thank u very much for your reply. I used as u specified "$line" in samtools command like samtools faidx Bos_taurusUMD3.fa "$line";

It is giving out like this. Sequence was not given. it displays ...

My input file (data1) is like this
Chr8:4000-4500
Chr10:4000-4600

I written a shell program like this.
while read LINE;
do echo "$LINE";
samtools faidx Bos_taurusUMD3.fa "$line";
done <...

My input file (data1) is like this
Chr8:4000-4500
Chr10:4000-4600

I written a shell program like this.
while read LINE;
do echo "$LINE";
samtools faidx Bos_taurusUMD3.fa "$line";
done <...

My input file (data1) is like this
Chr8:4000-4500
Chr10:4000-4600

I written a shell program like this.
while read LINE;
do echo "$LINE";
samtools faidx Bos_taurusUMD3.fa "$line";
done <...

I have two input files (given below) and to compare each line of the File1 with each line of File2 starts with '>sample1'. If a match occurs and that matched line in the File2 contains another line...

I have an input file in this format (shown below). I have to select the lines which doesnt followed by 'miR-" and to save such lines into an output file. For easy identification they are shown here...

I have two input files (given below) and to compare each line of the File1 with each line of File2 starts with '>sample1'. If a match occurs and that matched line in the File2 contains another line...

I want to read a file -line by line which consists of the following statements
Chr18:4000-4010
Chr20:4020-4030
Chr15:8000-8050

Pls. give a expression to read the line like this from a file

...