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Thank you! It works :) The chr1_17232_18061 was an accident.
Could you please explain how does awk '!a[$1]++' work? It collapses the rows with the same pattern in given column?

Hello,


I have this table:

chr1_16857_17742 - chr1 17369 17436 "ENST00000619216.1"; "MIR6859-1"; - 67
chr1_16857_17742 - chr1 14404 ...

I have a table with this structure:

cola colb colc
1 19 lemon
20 31 lemon
32 100 lemon
159 205 cherries
210 500 cherries

and need to parse it into this format:

cola colb colc
1 100...

My system is:
Linux helix 2.6.32-431.23.3.el6.x86_64 #1 SMP Thu Jul 31 17:20:51 UTC 2014 x86_64 x86_64 x86_64 GNU/LinuxAnd when I do qstat -u user, it shows:


...

Is it possible to lookup the path to the pbs script by Job ID? I cannot find the answer anywhere.

Thank you very much! It's working :)

I need to exclude the lines

Hello,

I have a list of patterns which I'd like to exclude from a file. I tried to do


while read line
do
grep -v $line file >> new.file
done < mylist


But obviously it won't work. It...

This is not the case but then it will all go into the first (and only) file.

I might have worded it wrong, sorry for the confusion. I don't want every line with the same first column in a separate file. I need to split file in, let's say 10 files, but check it for not putting...

Hi, I have a file like this:


aaa 123
aaa 223
aaa 225
bbb 332
bbb 423
bbb 6755
bbb 324
ccc 112
ccc 234
ccc 897


Which I need to split into several files, something like
split -l 3...

i need to grep a line without first field from file1 (basically, fields 2-6) and find them in file2. join won't work because it would find exact matches, and I need everything: if only field2 matches...

I need to find (basically, grep) matching lines ignoring the first field from file1:

field1 field2 field3 field4 field5 field6
id1 carrot white small
id2 carrot
id3 potato black...

It works! Thank you so much, Yoda! Could you please briefly explain what does it do? I'm trying to learn awk.

I have this structure:


col1 col2 col3 col4 col5
27 xxx 38 aaa ttt
2 xxx 38 aaa yyy
1 xxx 38 aaa yyy

I need to collapse duplicate lines ignoring column 1 and add values of duplicate lines...

it doesn't have to be '--', it can be just tab but it has to be something...

Hi guys,

could you please help me with this?

I have multiple files with this structure:

file1
xxx1 1.0
xxx2 3.5
xxx3 2.4
xxx4 3.0
…

xxx1890 5.7

file2
xxx1 8.0
xxx3 7.5...

When I write this script as a file and run it ( $awk sort.awk file1 > file2) it writes: awk: syntax error at source line 1 source file sort_col.awk
context is
awk >>> ' <<<
awk: bailing out at...

doesn't work :(((

Please help to sort columns in this file:

a b d f c e
1 4 10 16 7 13
2 5 11 17 8 14
3 6 12 18 9 15

I need to sort COLUMNS (so sort command doesn't work) like this:

a b c d e f ...

Thank you! The loop works without ^.

Hi guys,
please help me to make a loop!

I have two files.

File 1
2
4
7

File2
1 abc
2 cde
3 ghgj
4 kjhn
5 mbm
6 hghj
7 hgjk

I need to write a script that reads lines from File1,...