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Both options did the job for me. Thanks!
NOW, if you want to educate me ( and perhaps a few others) on how to add this in the perl script, so I do not have to run a bash or command line script it...

I have a script that runs on one file (at a time).
like this:
$> perl myscript.pl filename > output

How can I run it on >6000 files and have the output sent out into slightly modified file name...