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you need to modify your code to read such files.

alternatively u can write your own code for it using libcap library. Should not be that difficult. Do some research.

wireshark does not separate the connection packets, but has an option to manually ask it to that. I have a very huge file containing 40-50 k connections. manually separating is just infeasible.

I want to separate each tcp or udp connection packets into a separate file, is there any tool available which can do this.