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Search: Posts Made By: patrick chia
4
3,530
Posted By patrick chia
Hi, fajohnson... Your command line is worked....
Hi, fajohnson...
Your command line is worked. But still left all the header of the nucleotide sequence. Do you have better idea that I just remain the first header of those same nucleotide sequence?...
4
3,530
Posted By patrick chia
How can I remove those duplicate sequence in UNIX?What command line I should type?
The input is:
>HWI-EAS382_30FC7AAXX:4:1:1580:1465
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
>HWI-EAS382_30FC7AAXX:4:1:1062:1640
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
>HWI-EAS382_30FC7AAXX:4:1:272:629...
1
1,700
Posted By patrick chia
How can use the perl or other command line to calculate the length of the character?
For example, if I have the file whose content are:
>HWI-EAS382_30FC7AAXX:7:1:927:1368
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
>HWI-EAS382_30FC7AAXX:7:1:924:1373
ACGAACTTTAAAGCACCTCTTGGCTCGTATGCCGTC...
2
2,831
Posted By patrick chia
How can I calculate the total of nucleotide in Unix?What command line I should type?
For example, if I have the file whose content are:
>HWI-EAS382_30FC7AAXX:7:1:927:1368
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
>HWI-EAS382_30FC7AAXX:7:1:924:1373
ACGAACTTTAAAGCACCTCTTGGCTCGTATGCCGTC...
4
2,430
Posted By patrick chia
Perderabo, thanks a lot for your help. Your...
Perderabo, thanks a lot for your help. Your method is faster and effective. Really help me a lot. :b:
4
2,430
Posted By patrick chia
How to remove those sequence with same amino acid?What command line I should type?
My input is listed as:
giNumber RefAminoAcid VarAminoAcid
10190711 P P
10190711 D D...
1
3,982
Posted By patrick chia
How to use the programming in UNIX to count the total G+C and the GC%?What command li
Seems like can use awk and perl command. But I don't have the idea to write the command line. Thanks for all of your advise.
For example, if I have the file whose content are:
Sample 1....
5
52,323
Posted By patrick chia
How to use the programming in UNIX to count the total G+C and the GC%?What command li
Seems like can use awk and perl command. But I don't have the idea to write the command line. Thanks for all of your advise.
For example, if I have the file whose content are:
Sample 1....
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