Search Results

the problem... thanks!
Now trying to find the delete thread button... ;)

#! /usr/tsch

foreach f (`cat contacts.list`)
awk '{printf ($2 in a) ? ","$5 : (NR>1) ? RS $2 FS $5 : $2 FS $5; a[$2]} END{print e}' $f > $f_inter.map
end

My file: cat contacts.list is...

So if the command gsed isn't recognised, I don't have GNU sed on the terminal? or is there other short cuts to make a GNU sed command executable in non-GNU environment?
Dang it... Any way, THANKS!

Thanks!
I'm unfortunately not very familiar with sed and the given command won't run... :(
sed: command garbled: sed -e '/^.\{20,\}$/ { s/.\{60\}/&\n/g}; /^.\{1,20\}$/ { s/^.*$/>&/}'
can't...

Hi,
I'm in need of creating a file in the fasta format:
>1A6A.A
HVIIQAEFYLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITN...

Yeah!! It works!
Thanks for the help!
: )

Thanks again for the quick response once again.

So if I understood you correct, I have to write
#! /usr/bin/bash at the top of the file?
And is there any restrictions on naming files? Or...

Hi,
Just got handed this script
set def = HLA_DR.pockets
set data = DRB1_1501.dat

foreach a ( 'cat $data | args 3 |sort -u' )

cat $def | xC | grep -v $a > $$.def
cat $data | grep $a |...

Indeed!!!

THANKS so much.
Though I feel SO dumb, I didn't even think of that... :s and at the same time enlighted.. ;)
Thanks again and for the quick reply.

Hey,
I have finally made a command that works and now has to run it on 200+ files to run it on.
How do I do that?

Just fyi and if it complicates anything my commandline is:
awk '{if ($1 ~...

Thanks!
I can't make it work though...
Where do I substitute with my real file name(s)?
I tried to combi the two codes and it didn't work. What is it I do wrong?

ls *contacts | while $file ;...

YOU'RE A STAR!!!!!!!!
THANKS YOU SO MUCH!!!
yippiyeah.... yippiyeah..... ;D
Sorry I didn't get the thing with the for loop for the files, because how do I make the output from each file separated...

OK.
This is what I have:
C 306 P B 85 V 3.46
C 307 K B 81 H 2.69
C 307 K B 85 V 3.43
C 309 V B 82 N 2.67
C 309 V B 78 Y 3.23
C 309 V B 81 H 3.42
C 311 Q B 78 Y 3.46

And this is...

Sorry. Forgot that args is only on our 'server'. Yes, it's a script that 'takes' the stated arguments in the given line/file.
In this case it 'takes' argument 2 and 5 and paste them.
Basicly what...

Hey..
I've gotten inspired by another thread and used this:
#!/usr/bin/bash
args 2,5 $(<file.list)
It works but I'll like the results separated into different files or back into the...

Oh, thanks.
Sorry for hijacking the thread, I didn't even know it was a rude behaviour. Sorry.
Will post my problem in a new thread. Thanks for the hint, drl.

Hey..
I've used the above to make this: #!/usr/bin/bash
args 2,5 $(<file.list)
and it works but I'll like the results separated into different files or back into the used files.
e.g. use...

Thanks for the quick reply.

Hey,
I'm using the command from this thread https://www.unix.com/unix-dummies-questions-answers/590-converting-list-into-line.html
to convert vertical lines to horzontal lines. But I need to remove...

THANKS!!
Yup, it did help. A lot in fact.

well, now it gets complicated... because the thing is that I have a file with several (30+) different sets in the same format e.g
>1A6A.B ...

Oh, thanks a lot! That works!!
Can I add the identifier (1a6a.b) in a smart (and easy) way?

And if I want to do it for 30 files is there a smart way instead of repeating the command?
Thanks.

Sorry It's not working.. do I have to split my line/text first?
Or am I doing something wrong?

cat 1a6a.fsa ı awk '{substr (1,2,3)}'

Hey,

I really want to grep some specific positions in a line of letters. E.g. I need to know what's on position 10, 26 and 78.

I've tried some of the hints posted but nothing seem to work and...