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Thanks you very much!

Hi. I haven't had to write bash scripts in a long time and have a simple task to do, but need some help:

Input:

chrY:22627291-22651542
chrY:23045932-23070172
chrY:23684890-23696359...

.....

Wow, thank you. That was a very elegant solution.

Hi,

I am trying to do something which I thought was very simple but still being a beginner, has proved not to be.

Input:

val1 val2 val3 val4 val5 val6
.
.
.
etc

Desired Output:
...

Great! It's just supposed to be "printf" not "print" and a \n somewhere. Thanks!

Thanks,
I'm getting an error for line 6:
try1.sh: line 6: print: command not found

Trying to fix it now..

I really need help on creating a script that does the following:

I have one file (File 1) with lines in the following format:

Name.maf score1 score2


I have a second file (File 2) with...

I really need help on creating a script that does the following:

I have one file (File 1) with lines in the following format:

Name.maf score1 score2


I have a second file (File 2) with...

I have a very simple script here who's output is supposed to be a text file containing the same command applied to different files. Here it is:

#!/bin/bash
for f1 in newEN*bloc
do
...

It works for me..I changed the code I originally posted. Maybe you will try again and see that it works.. hopefully! I just tried it again and it gave me the right output:


chr7 27104483...

Woops! Here is the code I used:

awk '1 == NR || $NF >= 1000 {
if (c) print _, __, ___
_ = $1 FS $2
c = 1
i+=1
}

{ __ = $3; ___ = substr($4, 1, 6)"Cluster"i }
END {
print _,...

Thanks! I messed around with the incrementing a bit more but it worked in the end.

With the help of this forum, I have a script with the following output:

chr7 27104483 27105154
chr7 27106872 27110789
chr7 27111956 27112830
chr7 27114388 27125180
chr7 27126966 27131260...

Thanks. I didn't realize that copying and pasting onto a WordPad document then saving it as .txt, then doing dos2unix file.txt didn't work. So I tried pasting it just to notepad, doing dos2unix on...

It worked! I was having copy and pasting problems..

It WORKED! Thanks so much!! The way you had it was perfect, for some reason, it just had problems when I cut and paste it, and use dos2unix. But in the end, it worked. Thank you!

I'm a begginer awk user and not sure how to use nawk. Is there a way to make the first code work for awk?
O, and your output was correct. I didn't treat the last line correctly!

INPUT: Use distance <=1000 to merge

chr7 27104483 27104633 ENm010Block71 150 0
chr7 27104634 27104812 ENm010Block72 178 0
chr7 27104813 27105154 ENm010Block73 341 0
chr7 27106872 27106977...

Sure! This may take me a little while since I'm doing it manually, but it should be up in about 15 minutes. Thanks for your interest! :)

No, actually I meant to put the original
27420972

because the next distance is <=4000 as well, so those two would get merged as well. See, when you have several distances<=4000 consecutively,...

I need to write a script that reads through an input .txt file and replaces the end value with the end value of the next line for lines that have distance <=4000. The first label line is not actually...