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Search: Posts Made By: Syeda Sumayya
Forum: Linux 11-02-2015
2,045
Posted By Syeda Sumayya
No, not really, this isn't exactly what I wanted....
No, not really, this isn't exactly what I wanted.
There was a little mistake in the output I had shown, sorry! I've corrected it now.

I do want to compare $1 of file-1 with both columns of...
Forum: Linux 11-02-2015
2,045
Posted By Syeda Sumayya
Comapring columns in 2 files and printing the values that differ.
I have a file (file-1) that looks like this,
DIP-10097N|refseq:NP_416170|uniprotkb:P30015
DIP-10117N|refseq:NP_414973|uniprotkb:P08177
DIP-10168N|refseq:NP_418766|uniprotkb:P15005...
Forum: Linux 10-29-2015
3,216
Posted By Syeda Sumayya
Print the 1st column and the value in 2nd or 3rd column if that is different from the values in 1st
I have file that looks like this,

DIP-17571N|refseq:NP_651151 DIP-17460N|refseq:NP_511165|uniprotkb:P45890 DIP-17571N|refseq:NP_651151
DIP-19241N|refseq:NP_524261 ...
Forum: Linux 10-28-2015
1,974
Posted By Syeda Sumayya
Yep, it works. Thanks a lot :)
Yep, it works. Thanks a lot :)
Forum: Linux 10-28-2015
1,974
Posted By Syeda Sumayya
Print each ; separated value, in front of the value preceding them
I have a file that looks like this,
P38112 Q12389; Q03532; P43586; Q08208; P37838; P40693; P38805
Q12389 P32892; P36049; Q03532; P43586; Q12176; P38112; P39744; P37838
P11154 P39940
P50094...
Forum: Linux 10-19-2015
2,155
Posted By Syeda Sumayya
Thanks a lot R. Singh
Thanks a lot R. Singh
Forum: Linux 10-19-2015
2,155
Posted By Syeda Sumayya
How to remove lines without a particular string in either column?
I have a file that looks like this:

DIP-27772N DIP-18408N refseq:NP_523941
DIP-23436N|refseq:NP_536784 DIP-23130N|refseq:NP_652017
DIP-22958N|refseq:NP_651195 ...
13,355
Posted By Syeda Sumayya
Thank you Mr. Don Cragun...
Thank you Mr. Don Cragun (https://www.unix.com/members/302122727.html) for the correct answer.
13,355
Posted By Syeda Sumayya
Thank you RavinderSingh13...
Thank you RavinderSingh13 (https://www.unix.com/members/302148617.html) for the comment. Query 1 is resolved if I place the file with less lines as file1 and that with more lines as file 2. But I need...
13,355
Posted By Syeda Sumayya
Thank you for the script @RavinderSingh13...
Thank you for the script @RavinderSingh13 (https://www.unix.com/members/302148617.html).

There are two queries with the current script;
1. The output lacks the line which should contain a dash...
13,355
Posted By Syeda Sumayya
Merge and Sort tabular data from different text files
I have 42 text files; each containing up to 34 lines with following structure;

file1
H-01 23
H-03 5
H-05 9
H-02 14
.
.

file2
H-01 17
H-02 43
H-04 7
H-05 8
H-03 7
.
.

file3
2,860
Posted By Syeda Sumayya
Grep a string and count following lines starting with another string
I have a large dataset with following structure;

C 0001 Carbon [C]
D SAR001 methane [CH3]
D SAR002 ethane
D SAR003 propane
D SAR004 butane
D SAR005 pentane
C 0002 Hydrogen [H]...
Forum: Linux 10-13-2015
2,736
Posted By Syeda Sumayya
Oh yes I got it. thanks. now i can change the...
Oh yes I got it. thanks.
now i can change the code into
awk '{sub(/\_$/,"anything",$2);print}to print anything I want at the end of column 2.

Thanks a lot :)

One thing more, how can I...
Forum: Linux 10-13-2015
2,736
Posted By Syeda Sumayya
Thanks R. Singh but I am not really getting it,...
Thanks R. Singh but I am not really getting it, possibly because i have a very limited knowledge of awk commands.
what do I have to do if I only want to remove the _ from 2nd column? I have tried...
Forum: Linux 10-13-2015
2,736
Posted By Syeda Sumayya
Removing a character at specific position in a column
Hi,

I have a file like this (about 8 columns in total, this being the 2nd column)
gi_49482297_ref_YP_039521.1_
gi_49482297_ref_YP_039521.1_
gi_49482315_ref_YP_039539.1_...
Forum: Linux 09-30-2015
2,239
Posted By Syeda Sumayya
Yep, that's a mistake on my part. They sure don't...
Yep, that's a mistake on my part. They sure don't match exactly.
The contents of file-A and B that I have given in my question initially was just an example (and not a very good one) of a very large...
Forum: Linux 09-29-2015
2,239
Posted By Syeda Sumayya
Actually both the columns of file-B are...
Actually both the columns of file-B are interacting-protein-partners.
I want to match the column4 of file-A with both the columns of file-B, to see which of the protein of column4, file-A is also...
Forum: Linux 09-29-2015
2,239
Posted By Syeda Sumayya
Comparing specific columns between two files
Dear All,

I have two files. File-A having 5 columns and File-B having 2 columns.
I want to match 4th column of file-A with both columns of file-B and print all contents of file-A + the matching...
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