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Hello, Thanks for the reply. With the above code, only the last line of the pattern file got printed. Can you kindly check?






chr1 1000 2000 chr1 12000 13000 5 281 ...

Hello, I have a very large file (DB_file.txt) with coordinate positions, example:


example for the DB_file.txt


chr1 1000 2000 chr1 10000 11000 3 281 0 ...

I have a tab-delimited data representing network data (undirected). Among the duplicated edges, I wanted to select those edges for which I have the higher absolute value of the log values.
I have...

I have a variation table (variation.txt) which is a very big file. The first column in the chromosome number and the second column is the position of the variation. I have a second file...

python - Comparing two network edge lists - Stack Overflow (https://stackoverflow.com/questions/51665542/comparing-two-network-edge-lists)

I am just asking for help so that I can process my data faster. Efforts were did put in, but not using shell, but thanks for your interest to point things out

Well, no body posted any answers in that. I did using Python.

Hello, I have two edgelists. One bigger list master.txt and a subset of that, child.txt. I want to print out all the edges in master.txt which is not there in child.txt. I have done it the Python...

Hello,

I have two network edgelists with first two columns as nodes and the last column pearson correlation coefficient (PCC). I want to remove the edges from net1 whose edges are common with net2...

Hello, I need to find the intersection across 10 columns. Kindly help.

my file (INPUT.csv) looks like this
4_R 4_S 8_R 8_S 12_R 12_S 24_R ...

I want to compare 4 edge-lists to basically see if an edge is present in all 4 networks. The issue is that an edge A-B in one file can be present as B-A in another file.

Example:

Input 1: ...

Hi, I was using your second program, wanted to know how to run this program using a script? Just saving in a .sh file would work ?

I have this file input.txt. I want to take average column-wise for the rows having duplicate gene names.


Gene Sample_1 Sample_2 Sample_3
gene_A 2 4 5
gene_B 1 2 3
gene_A 0 5 7
gene_B 4 5 6...

Actually File2 is getting printed and not File1 with this code. Its my mistake that I did not mention the file names properly..have corrected it now. I want the final result to be appended to...

I want to compare 2 files, locus_file.txt is a very large file and attr.txt is a small file. I want to match the first 2 columns of the first file to the second column of attr.txt and print the...

I have a file which has connections given as:



A B 0.1
B C 5.8
C B 5.8
E F 0.67
B A 0.1


A B and B A are same, so I want to remove one of them. Same with BC and CB.
Desired output:
...

Thanks, yea I am considering CA and AC as duplicates

I have an edge-list with nodes, edge.txt

A B
B J
J H
C A
G H
G A
A C
K G



I have another file which tells me which of these nodes are important, input.txt


G
C
A

I have a .csv file:

A,B,0.6
C,D,-0.7
D,E,0.1
A,E,0.45
D,G, -0.4
I want to select rows based on the values of the 3rd columns such that it is >=0.5 or <= -0.5
Thanks.

A,B,0.6
D,G, -0.7

Thanks, is it possible to redirect the output in a csv format as well ?

like A,B,0.04 ?

I have a 13gb file. It has the following columns:
The 3rd column is basically correlation values. I want to delete those rows which are repeated between the columns:

A B 0.04
B C 0.56
B B 1
A...

I have a file with two columns and each pair in the rows denote 2 connected nodes in the network file, edge_list.txt. Given a query file, input.txt, I want to retrieve the nodes that are directly...

My input file is:



LOC_Os01g01870 GO:0006139
LOC_Os01g01870 GO:0009058
LOC_Os01g02570 GO:0006464
LOC_Os01g02570 GO:0009987
LOC_Os01g02570 GO:0008152
LOC_Os01g04380 ...

Hello,
I want to use shell script to generate network files (I tried with python but its taking too long).

I have a list of nodes:
node.txt

LOC_Os11g37970
LOC_Os01g07760
LOC_Os03g19480...

Hello, I have a file with nearly 57K lines. I want to filter the lines based on the range of values in a column. For e.g. print lines whose 3rd filed is >=0.02.
Input file:

LOC_Os09g32030 ...