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Thank you all for the useful inputs..

All the scripts are working perfectly except for some minor variations which i did at some places to change the output format...

yes..that's what i mean ...all 2-17/17-2 and such pairs are same..

hello,

I have an input file which looks like this:

2 C:G 17 -0.14 8.75 33.35
3 G:C 16 -2.28 0.98 28.22
4 C:G 15 0.39 11.06 29.31
5 G:C 14 2.64 5.17 36.07
6 G:C 13 -0.65 2.05...