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Huh. That's really strange I'm not sure how that happened. I'm going to have to unalign anyways (removes dashes). So I'll just run another uniqueness command at that stage and it should be a done...

>gi|332981533...

Doesn't do it unfortunately.

oh this does work! I made a mistake entering it. Thanks so much!

---------- Post updated at 10:31 PM ---------- Previous update was at 10:28 PM ----------

It seems that this removes some...

This still only returns the list of unique gi numbers, not their respective sequences.

So I have a bunch of files that look like this
>gi|33332323
MMKCRGVIMVVEKVMKRDGRIVPFDESRIRWAVQ---
>gi|45235353
MMKCR----VEKMRDVFFDESIRWAVQ

They go on...sequences are much longer but all in...