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5,603
Posted By cpp_beginner
Hi Scrutinizer, It seems worked perfectly...
Hi Scrutinizer,

It seems worked perfectly now :)
Let me manual checking it one by one now.

Thanks a lot and again.

---------- Post updated at 11:57 AM ---------- Previous update was at...
5,603
Posted By cpp_beginner
Hi Scrutinizer, I run your awk command at...
Hi Scrutinizer,

I run your awk command at terminal as below:

awk ' NR==FNR { R[$1,$2]=$3 next } FNR>1 { h=$1 len=length($2) print RS h for(i=2; i<=NF; i++) { s=x for(j=1; j<=len; j++) {...
5,603
Posted By cpp_beginner
Hi Scrutinizer, Glad that it is clear now. ...
Hi Scrutinizer,

Glad that it is clear now.
I think I facing Syntax error again :(

I try to add semicolon at your code Post@16.
I believe I might missing some semicolon when run your awk...
5,603
Posted By cpp_beginner
Hi Scrutinizer, Might to know what confuse...
Hi Scrutinizer,

Might to know what confuse you now?
Thanks.

---------- Post updated at 10:04 AM ---------- Previous update was at 09:47 AM ----------

I just edited my Post#1.

Hope it no...
5,603
Posted By cpp_beginner
Hi Scrutinizer, It is doesn't matter the...
Hi Scrutinizer,

It is doesn't matter the line issue on File 1. I can be a line which all words together or I can split the long word into many different line with 100 record each line.

The main...
5,603
Posted By cpp_beginner
Hi Scrutinizer, I just edited my Post#1. ...
Hi Scrutinizer,

I just edited my Post#1.
Is that make the thing clear now?

Basically I still have 2 Input File now.
The data I shown in Post#1 just a first few record as the whole file is...
5,603
Posted By cpp_beginner
Thanks, Scrutinizer. Might to know how to...
Thanks, Scrutinizer.

Might to know how to correct Syntax error issue again?
If I run it as a long awk command at terminal.
It will return Syntax error etc.

If I copy and paste the whole...
5,603
Posted By cpp_beginner
Thanks for reminding, RudiC. Sorry for my...
Thanks for reminding, RudiC.
Sorry for my mistake.

I just edit my Post 1.
Thanks a lot.
5,603
Posted By cpp_beginner
Many thanks for your help. I split the long...
Many thanks for your help.

I split the long sequence into 100 word a line now.
Unfortunately the output file just return the header with the first 100 word record :(
5,603
Posted By cpp_beginner
Hi Scrutinizer, Thanks again. It worked...
Hi Scrutinizer,

Thanks again.
It worked perfectly with my sample sequence provided.
However I aware if I replace it with my real own data set.
It just print out the original File 1 :(

Would...
5,603
Posted By cpp_beginner
Hi Scrutinizer, I try with your awk code. It...
Hi Scrutinizer,

I try with your awk code. It seems to return "Syntax error" :(

awk: NR==FNR { R[$1,$2]=$3 next } FNR>1 { s=x for(i=1; i<=length($2); i++) s=s (($1,i) in R ? R[$1,i] :...
5,603
Posted By cpp_beginner
Hi, It seems like no work :( It return the...
Hi,

It seems like no work :(
It return the header together with the length of the fasta file I believe.

awk 'NR==FNR {a[$1,$2]=$2; b[$1,$2]=$3; c[$1]=$1; next} /^>/ {w=$0; sub(".*> *", "", w)}...
5,603
Posted By cpp_beginner
Hi, The fasta sequence is only a very long...
Hi,

The fasta sequence is only a very long single line :)

---------- Post updated at 04:52 AM ---------- Previous update was at 04:47 AM ----------

Hi,

Sorry.
Mind to know why it will...
5,603
Posted By cpp_beginner
Help with merge data with a reference sequence
I have two input file.:

File 1 is a large reference sequence (A large Fasta sequence);

File 1 (is a file which first line is the header description and line other ">" is its corresponding word...
14,115
Posted By cpp_beginner
Help with filter result (scientific notation) by using awk
Input file:

data1 0.05
data2 1e-14
data1 1e-330
data2 1e-14
data5 2e-60
data5 2e-150
data1 4e-9

Desired output:

data2 1e-14
data1 1e-330
data2 1e-14
data5 2e-60
data5 2e-150

I...
1,427
Posted By cpp_beginner
Thanks, Cragun. It worked perfect for my case...
Thanks, Cragun.
It worked perfect for my case :)

---------- Post updated at 12:57 AM ---------- Previous update was at 12:56 AM ----------

Thanks, Singh.
It worked fine for my case as well :)...
1,427
Posted By cpp_beginner
Help with print out record if first and next line follow specific pattern
Input file:

pattern1 100 250 US
pattern2 50 3050 UK
pattern3 100 250 US
pattern1 70 1050 UK
pattern1 170 450 Mal
pattern2 40 750 UK
.
.

Desired Output...
1,503
Posted By cpp_beginner
Help with using awk to print pattern/occurence
Hi,

Do anybody know how to use awk to count the pattern at specific column?
Input file

M2A928K 419 ath-miR159a,gma-miR159a-3p,ptc-miR159a 60 miR235a
.
.

Output file

M2A928K 419...
1,941
Posted By cpp_beginner
Problem facing to compare different column and print out record with smallest number
Hi,

Input file 1 :

37170 37196 77 51
37174 37195 73 52
37174 37194 73 53

Desired Output file 1 :

37170 37196 77 51

Input file 2 :

37174 37195...
2,141
Posted By cpp_beginner
Thanks, it worked fine and perfect :) ...
Thanks, it worked fine and perfect :)

---------- Post updated at 09:59 PM ---------- Previous update was at 09:39 AM ----------

Hi Subbeh,

I have one more question need your advice :
...
2,141
Posted By cpp_beginner
Problem to print out record got smallest number in specific column
Hi,

Anybody know how to print out the record that shown smallest number among column 3 and column 4
Case 1 Input :

37170 37196 77 51
37174 37195 73 52
37174 37194 73 ...
2,082
Posted By cpp_beginner
Thanks RudiC. It worked based on the input...
Thanks RudiC.
It worked based on the input file.
Do you mind to explain what is the meaning of "sort -k1.4n" ?
I can't really understand it.

Thanks first :)
2,082
Posted By cpp_beginner
Hi anbu23, I hope that second column is from...
Hi anbu23,

I hope that second column is from smallest to largest while third column is largest to smallest.

Thanks ya :)
2,082
Posted By cpp_beginner
Help with sort word followed by exponential number and numeric number at the same time
Input file:

ID_34 2E-69 2324
ID_1 0E0 3254
ID_1 0E0 5434
ID_5 0E0 436
ID_1 1E-14 2524
ID_1 5E-52 46437
ID_3 65E-20 45467
ID_1 0E0 6578
...
[code]
Desired output file:
[code]
ID_1 0E0...
3,239
Posted By cpp_beginner
Hi RudiC, After I try your awk command, it...
Hi RudiC,

After I try your awk command, it able to shown underline of region interest through terminal.
However when I open those *.txt by Microsoft Excel or Notepad.
It shown some...
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