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'm sure this will solve the problem ...
Sorry, but I was out for a couple of days.

Yes something like this, but also has to match the strain...

something like

line x file 2 : 136 non <T> 5083_6_1 >A<
this line match with the line y file 1: 12 52000 1 1 1...

Thank you again,
I have to extract the lines in file 2, whose coordinates are between Start and End positions of the file 1, which also belong to the same strain. In other words two assumptions must...

Thanks so much for give me a hand, but ...
I know, I know I'm the worst, but not how to use your help ... that is to introduce into the script for a new script ...?
Thanks again and I regret so...

Hi everybody,
First I apologize if my question seems demasiad you silly, but it really took 4 days struggling with this, I looked at books, forums ... And Also ask help to a friend that is software...