Python for text manipulating


 
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# 8  
Old 02-14-2015
Yes I am aware that and adjusted shebang for my system but still get the mentioned error. Could the error be related to python version? I have python 2.7.


Quote:
Originally Posted by Scrutinizer
Note that durden tyler called the script like this:
Code:
python pivot_epi_dist.py

While you call it like this:
Code:
./convert.py

That would work if the shebang were correct. You need to specify the absolute path to python, for example:
Code:
#!/usr/bin/python

if that is where python lives on your system, or
Code:
#!/usr/bin/env python

# 9  
Old 02-14-2015
The print FUNCTION in the code is a version 3.x method, the print statement no longer exists in these versions.

However the print statement is what you require so should be Version 2.x and lower.

There were/are several differences between versions up to 2.7.x and 3.0.0 and above.
# 10  
Old 02-14-2015
Yes, the issue was the "print()". In my earlier post, I used Python version 3.4 (Anaconda on Windows 7) where print() is a function. Your version is 2.7 where print is a statement. The syntax is different in versions 3 and less-than-3.
More information here:
Code:
https://docs.python.org/3.0/whatsnew/3.0.html

And the fix for version less than 3 (this is on Cygwin on Windows 7):

Code:
$
$ python --version
Python 2.7.8
$
$ cat pivot_epi_dist_ver1.py
#!python
pivot = []
index = -2
fin = open('epi_dist.txt', 'rt')
for line in fin:
    line = line.strip()
    if line == '':
        continue
    if line[0:4] == 'Epi.':
        index += 1
        iter = 0
    else:
        nums = line.split()
        for num in nums:
            if index < 0:
                pivot.append([num])
            else:
                pivot[iter].append(num)
                iter += 1
fin.close()
for row in pivot:
    print " ".join(row)
$
$
$ python pivot_epi_dist_ver1.py
0.7466E-07 0.2102E-06 0.5564E-07
0.4942E-07 0.9821E-07 0.8314E-07
0.7133E-07 0.6322E-07 0.8364E-07
0.6010E-07 0.1665E-06 0.3975E-07
0.1123E-06 0.5524E-06 0.4601E-07
0.4819E-07 0.6590E-07 0.4936E-07
0.9435E-07 0.1916E-06 0.5480E-07
0.6491E-07 0.1292E-06 0.1290E-06
0.6051E-07 0.1104E-06 0.4882E-07
0.5202E-07 0.8035E-06 0.4571E-07
0.1647E-06 0.6358E-06 0.1229E-06
0.5267E-07 0.4661E-07 0.2128E-06
0.5724E-07 0.9605E-07 0.8432E-07
0.1031E-06 0.1492E-06 0.9233E-07
0.1143E-06 0.1093E-06 0.4091E-07
0.4776E-07 0.1931E-05 0.5957E-07
0.3594E-06 0.7120E-07 0.7815E-07
0.4832E-07 0.9829E-07 0.6687E-07
0.7363E-07 0.1230E-05 0.5402E-07
0.1009E-06 0.4093E-06 0.6230E-07
0.6381E-07 0.1910E-06 0.6264E-07
0.6170E-07 0.2032E-06 0.1231E-06
0.6429E-07 0.9052E-07 0.6061E-07
0.9720E-07 0.5392E-07 0.4451E-07
0.4749E-07 0.5534E-06 0.7700E-07
0.6851E-07 0.9899E-07 0.3504E-07
0.1585E-06 0.1620E-06 0.1151E-06
0.8395E-07 0.1220E-06 0.1150E-06
0.4581E-07 0.1220E-06 0.5685E-07
0.7321E-07 0.3248E-06 0.5579E-07
$
$

This User Gave Thanks to durden_tyler For This Post:
# 11  
Old 02-14-2015
Thank you again, this time it works perfectly. Smilie


Quote:
Originally Posted by durden_tyler
Yes, the issue was the "print()". In my earlier post, I used Python version 3.4 (Anaconda on Windows 7) where print() is a function. Your version is 2.7 where print is a statement. The syntax is different in versions 3 and less-than-3.
More information here:
Code:
https://docs.python.org/3.0/whatsnew/3.0.html

And the fix for version less than 3 (this is on Cygwin on Windows 7):

Code:
$
$ python --version
Python 2.7.8
$
$ cat pivot_epi_dist_ver1.py
#!python
pivot = []
index = -2
fin = open('epi_dist.txt', 'rt')
for line in fin:
    line = line.strip()
    if line == '':
        continue
    if line[0:4] == 'Epi.':
        index += 1
        iter = 0
    else:
        nums = line.split()
        for num in nums:
            if index < 0:
                pivot.append([num])
            else:
                pivot[iter].append(num)
                iter += 1
fin.close()
for row in pivot:
    print " ".join(row)
$
$
$ python pivot_epi_dist_ver1.py
0.7466E-07 0.2102E-06 0.5564E-07
0.4942E-07 0.9821E-07 0.8314E-07
0.7133E-07 0.6322E-07 0.8364E-07
0.6010E-07 0.1665E-06 0.3975E-07
0.1123E-06 0.5524E-06 0.4601E-07
0.4819E-07 0.6590E-07 0.4936E-07
0.9435E-07 0.1916E-06 0.5480E-07
0.6491E-07 0.1292E-06 0.1290E-06
0.6051E-07 0.1104E-06 0.4882E-07
0.5202E-07 0.8035E-06 0.4571E-07
0.1647E-06 0.6358E-06 0.1229E-06
0.5267E-07 0.4661E-07 0.2128E-06
0.5724E-07 0.9605E-07 0.8432E-07
0.1031E-06 0.1492E-06 0.9233E-07
0.1143E-06 0.1093E-06 0.4091E-07
0.4776E-07 0.1931E-05 0.5957E-07
0.3594E-06 0.7120E-07 0.7815E-07
0.4832E-07 0.9829E-07 0.6687E-07
0.7363E-07 0.1230E-05 0.5402E-07
0.1009E-06 0.4093E-06 0.6230E-07
0.6381E-07 0.1910E-06 0.6264E-07
0.6170E-07 0.2032E-06 0.1231E-06
0.6429E-07 0.9052E-07 0.6061E-07
0.9720E-07 0.5392E-07 0.4451E-07
0.4749E-07 0.5534E-06 0.7700E-07
0.6851E-07 0.9899E-07 0.3504E-07
0.1585E-06 0.1620E-06 0.1151E-06
0.8395E-07 0.1220E-06 0.1150E-06
0.4581E-07 0.1220E-06 0.5685E-07
0.7321E-07 0.3248E-06 0.5579E-07
$
$

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