8 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
I have 4000 files like
$cat clus_grp_seq10_g.phy
18 1002
anig_OJJ65951_1 ATGGTTTCGCAGCGTGATAGAGAATTGTTTAGGGATGATATTCGCTCGCGAGGAACGAAGCTCAATGCTGCCGAGCGCGAGAGTCTGCTAAGGCCATATCTGCCAGATCCGTCTGACCTTCCACGCAGGCCACTTCAGCGGCGCAAGAAGGTTCCTCG
aver_OOF92921_1 ... (1 Reply)
Discussion started by: sammy777888
1 Replies
2. Shell Programming and Scripting
The perl parser below works as expected assuming the last digit in the NC_ before the . is a single digit.
perl -ne 'next if $. == 1;
if(/.*del(+)ins(+).*NC_0{4}(+).*g\.(+)_(+)/) # indel
{
print join("\t", $3, $4, $5, $1, $2), "\n";
}
' out_position.txt > out1.txt
... (8 Replies)
Discussion started by: cmccabe
8 Replies
3. Shell Programming and Scripting
The below perl code imports the data in the attached document. However, I can not seem to update the perl code to include a parser like in the desired tab of that document. Thank you :).
Most of the data for the parse is included in the document except for the gene and RNA which can is... (0 Replies)
Discussion started by: cmccabe
0 Replies
4. Shell Programming and Scripting
HI,
I have XML file which is having values as Spanish character (UTF-8 encoding). I am using XML::parser module but my code is not able to read those characters. I did goggling but not able to find suitable solution. Anybody please help me out.
XML file having characters like: ñ
I am... (1 Reply)
Discussion started by: jatanig
1 Replies
5. Shell Programming and Scripting
Hello.
Can anybody help me with some sub on perl that can parse config like this:
%CFG (
'databases' => {
'db1' => 'db_11', 'db_12', 'db_13',
'db2' => 'db_21', 'db_22', 'db_23'
}
'datafiles' => {
'datadir1' => 'datadir_11', 'datadir_12',
'datadir2' =>... (4 Replies)
Discussion started by: drack
4 Replies
6. Shell Programming and Scripting
Hello
I want to write an xml- parser with perl an i use the libary XML::LibXML.
I have a problem with the command getElementsByTagName.
If there is an empty tag, the getElementsByTagName method returns a NodeList of length zero.
how can i check if this is a nodelist of lenght zero??
i... (1 Reply)
Discussion started by: trek
1 Replies
7. Shell Programming and Scripting
I am very new to XML. Really I have an excel file that I am trying to read w/ Perl on a Linux machine. I don't have a mod for reading excel files so I have to convert the excel file to xml to be able to read it. I can read the file and everything is ok except...the Number style is being dropped... (0 Replies)
Discussion started by: vincaStar
0 Replies
8. Shell Programming and Scripting
hi all i want to read xml file in perl i am using XML::Simple for this. i am not getting how to read following file
removing xml file due to some reason (1 Reply)
Discussion started by: zedex
1 Replies