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Maybe you need replace command md5sum to md5, depend on your system.

With below command, you can find out any files different between two folders, not only the file name.
find /home/dir1 -type f...

Try (ksh93, bash):
diff <(find DIR1 | sed 's|^DIR1/||') <(find DIR2 | sed 's|^DIR2/||')
But just
diff -r -N DIR1 DIR2
should work too.

prune doesn't take more than one name, you have to do two prunes.

find /developer/ -name 'dirtoskip1' -prune -o -name 'dirtoskip2' -prune -o -type f -mtime +30 -exec ls -l '{}' ';'

Depending on...