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Here's a short Perl program that does that -


#perl -w
$pattern = "file*"; # process only those files that match pattern "file*"
while (defined ($in = glob($pattern)))...

You could try to escape the "%":
gawk "NR\%3==0"

Isn't the Escape in MSDOS Batch %% ?

Have you tried:

gawk "NR%%3==0" FileIn > FileOut

I noticed that Cygwin's gawk works as expected on my system -


C:\>
C:\>type file1.in
this is line 1 in file1.in ...
this is line 2 in file1.in ...
this is line 3 in file1.in ...
this...