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In case your column count isn't always two or the row count isn't the same in all columns, you could also try:
awk '
BEGIN { ncol = row = 0
}
/^$/ { ncol++
if(row > maxrow)
maxrow = row...

pr -mts$'\t' <(sed '/^$/,$d' file) <(sed '1,/^$/d' file)
a different order would be easier
fmt file | column -t
But I understand the elementary example has a more complex structure?

--- Post...

Is that something like below command you are expecting ?

tr ' ' '\n' < File.txt

What do you mean by "column wise"? As far as I can see, there is just one column?

Provide required input and output to help you