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The idea here is to ensure that we get lists of files in exactly the same order, find out the checksum for each file, then compare the two lists. We do the compare on the source computer in case we...

You can check hash e.g. sha1sum. I would tar the whole directory and calculate sha1sum on the fly:

tar czf - /path/to/dir | sha1sumThen do the same on the other side and verify that the checksums...