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Forum: UNIX for Dummies Questions & Answers 02-11-2013

Grep for a range of numbers?

14,367

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awk '$3 == "chr3" && ($4 + 0) >= 112937439 && $4...

awk '$3 == "chr3" && ($4 + 0) >= 112937439 && $4 <= 113437438' file.sam > subset.sam

Forum: UNIX for Dummies Questions & Answers 02-11-2013

RNA-seq analysis

1,978

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As you didn't post a sample of your file i am...

As you didn't post a sample of your file i am left to guessing, but no problem: just give me a moment while i inspect your file with my crystal ball....

OK, somehow the device must be broken, but...

Forum: UNIX for Dummies Questions & Answers 02-11-2013

RNA-seq analysis

1,978

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Try with grep -w to match exact word grep -w...

Try with grep -w to match exact word
grep -w 'IH:i:1' file.sam | uniq -u >filtered.sam

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