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make sure that "file1.txt" is changed to point to a files that has 89 columns.

I tested it and it works fine here with 89 columns, given column 1 is the id, column 6 is the Chr data, column 88 is...

I found the issue.
See my above comment... I updated it to show what I did.

---------- Post updated at 04:09 PM ---------- Previous update was at 03:31 PM ----------

Actually, now that we have...