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You need to watch your quotes and escaping. In PHP this is all one big double-quoted section, and any double quotes inside it must be escaped so they don't end early.

<?php
$output =...

Does the sample given in post #1 represent the log file's structure one to one? I guess you don't have two alternating consecutive line types but quite some more ("watchdog"), and mayhap the pairs...

date -d "0 day" "+%Y-%m-%-d"
should be
date -d "0 day" "+%Y-%m-%d"