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You should always run a cryptographic file system integrity checking system like tripwire on a daily basis.

Then, you could know what files have been compromised.

If you have full-backups made, restore to a good one. Otherwise... how could you possibly trust it's not doing anything behind your back?

Hi,
There are some ways to enter a compromised system even if you have changed the root password. Probably the hacker has modified the system, so he can enter without being asked a password.
...

tr -d '\r' < script > script.new

@franx47: I missed this: Not all seds support \n in its replacement.

How about:
grep -c 'gold' file.txt