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Hai,

in ur java class ur specfying some thing to print on console but may be there may be no console
opened to print ur s.o.println from crontab u can't start application which have...

Post some examples of data in files a.txt and b.txt that you run the following command on:comm -13 a.txt b.txt

You are putting backticks where they have no purpose. You don't need backticks if you're putting the output through a pipe.

Try (uuencode $file1 $file1 ; uuencode $file2 $file2) | mailx -m -s...

Did you take a look at it with one of the tools I suggested? If not, do so. If you do not know how to interpret their output, post it here (and make sure to use code tags to preserve the formatting)....

You can:
1.) On the source machine create a list of files and stash it into a variable and issue one scp command:

l=""
while read i ; do
l="$l $i "
done < mylistOfLogs.lst

scp $l...