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Maybe I missed it but I didnt see a statement to actually run anything?

is this it?
echo ./sorter $NUM? >> outputfile
if yes then you have to do the following to actually run the sorter...

This works for me

#!/bin/bash
args=("$@")
INDEX=0
touch sorterfile
if [ -z $args ]; then
echo "Error"
else
while [ $# -gt $INDEX ]; do
NUM=${args[$INDEX]}
echo $NUM
echo ./sorter $NUM >>...

ps aux | sort -k1 - | awk '{print $1}' | uniq -c
is this OK?