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LEARN ABOUT DEBIAN
swiss::ccs
SWISS::CCs(3pm) User Contributed Perl Documentation SWISS::CCs(3pm)
Name
SWISS::CCs
Description
SWISS::CCs represents the CC lines within a Swiss-Prot or TrEMBL entry as specified in the user manual
http://www.expasy.org/sprot/userman.html . The CCs object is a container object which holds a list comprised of object of the type
SWISS::CC or derived classes (see below).
Code example
local $/="
//
";
while (<>) {
my $entry = SWISS::Entry-> fromText($_);
my @CCs = $entry -> CCs -> elements();
for my $CC (@CCs) {
if ($CC -> topic eq 'ALTERNATIVE PRODUCTS') {
# now can call methods of CCalt_prod
} elsif ($CC -> topic eq 'Copyright') {
# now can call methods of CCcopyright
} else {
# now can call methods of CC
}
}
}
Inherits from
SWISS::ListBase.pm
Attributes
"list"
Each list element is an object of one of the following classes, depending of the type of comment:
topic object
-------------------- --------------------
ALTERNATIVE PRODUCTS SWISS::CCalt_prod
RNA EDITING SWISS::CCrna_editing
BIOPHYSICOCHEMICAL PROPERTIES SWISS::CCbpc_properties
INTERACTION SWISS::CCinteraction
Copyright SWISS::CCcopyright
(all other topics) SWISS::CC
Methods
Standard methods
new
fromText
sort
Sort the CC block according to the order given in Swiss-Prot annotation note ANN017.
toText
update
Reading/Writing methods
ccTopic ($topic)
Returns true if entry contains a comment block with the specified topic.
copyright
Returns a string representation of the copyright text.
del (@patternList)
Deletes all comment elements whose topic matches the first element of the pattern list. The second element is the used to specify a
requirement for the comment to match as well.
get (@patternList)
An array is returned consisting of all comment elements elements whose topic matches any elements of the pattern list.
getObject (@patternList)
Same as get, but returns the results wrapped in a new ListBase object.
toString
Returns a string representation of the CCs object.
perl v5.10.1 2008-07-16 SWISS::CCs(3pm)
06-05-2004
