bio::liveseq::exon(3pm) debian man page | unix.com

Bio::LiveSeq::Exon(3pm) 				User Contributed Perl Documentation				   Bio::LiveSeq::Exon(3pm)

NAME
       Bio::LiveSeq::Exon - Range abstract class for LiveSeq

SYNOPSIS
	 # documentation needed

DESCRIPTION
       Class for EXON objects. They consist of a beginlabel, an endlabel (both referring to a LiveSeq DNA object) and a strand.  The strand could
       be 1 (forward strand, default), -1 (reverse strand).

AUTHOR - Joseph A.L. Insana
       Email:  Insana@ebi.ac.uk, jinsana@gmx.net

APPENDIX
       The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

   new
	 Title	 : new
	 Usage	 : $exon1 = Bio::LiveSeq::Exon-> new(-seq => $objref,
						     -start => $startlabel,
						     -end => $endlabel, -strand => 1);

	 Function: generates a new Bio::LiveSeq::Exon
	 Returns : reference to a new object of class Exon
	 Errorcode -1
	 Args	 : two labels and an integer

   get_Transcript
	 Title	 : get_Transcript
	 Usage	 : $transcript = $obj->get_Transcript()
	 Function: retrieves the reference to the object of class Transcript (if any)
		   attached to a LiveSeq object
	 Returns : object reference
	 Args	 : none
	 Note	 : only Exons that compose a Transcript (i.e. those created out of
		   a CDS Entry-Feature) will have an attached Transcript

perl v5.14.2							    2012-03-02						   Bio::LiveSeq::Exon(3pm)