Bio::LiveSeq::Exon(3pm) User Contributed Perl Documentation Bio::LiveSeq::Exon(3pm)
NAME
Bio::LiveSeq::Exon - Range abstract class for LiveSeq
SYNOPSIS
# documentation needed
DESCRIPTION
Class for EXON objects. They consist of a beginlabel, an endlabel (both referring to a LiveSeq DNA object) and a strand. The strand could
be 1 (forward strand, default), -1 (reverse strand).
AUTHOR - Joseph A.L. Insana
Email: Insana@ebi.ac.uk, jinsana@gmx.net
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
new
Title : new
Usage : $exon1 = Bio::LiveSeq::Exon-> new(-seq => $objref,
-start => $startlabel,
-end => $endlabel, -strand => 1);
Function: generates a new Bio::LiveSeq::Exon
Returns : reference to a new object of class Exon
Errorcode -1
Args : two labels and an integer
get_Transcript
Title : get_Transcript
Usage : $transcript = $obj->get_Transcript()
Function: retrieves the reference to the object of class Transcript (if any)
attached to a LiveSeq object
Returns : object reference
Args : none
Note : only Exons that compose a Transcript (i.e. those created out of
a CDS Entry-Feature) will have an attached Transcript
perl v5.14.2 2012-03-02 Bio::LiveSeq::Exon(3pm)
