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BP_MAKE_MRNA_PROTEIN(1p)				User Contributed Perl Documentation				  BP_MAKE_MRNA_PROTEIN(1p)

NAME
       make_mrna_protein - Convert an input mRNA/cDNA sequence into protein

DESCRIPTION
       Convert an input mRNA/cDNA sequence into protein using translate()

	 -f/--frame	      Specifies frame [0,1,2]

       One can also specify:

	 -t/--terminator      Stop Codon character (defaults to '*')
	 -u/--unknown	      Unknown Protein character (defaults to 'X')
	 -cds/--fullcds       Expected Full CDS (with start and Stop codon)
	 -throwOnError	      Throw error if no Full CDS (defaults to 0)
	 -if/--format	      Input format (defaults to FASTA/Pearson)
	 -of/--format	      Output format (defaults to FASTA/Pearson)
	 -o/--output	      Output Filename (defaults to STDOUT)
	 -i/--input	      Input Filename (defaults to STDIN)
	 -ct/--codontable     Codon table to use (defaults to '1')

       See Bio::PrimarySeq for more information on codon tables and the translate() method

AUTHOR - Jason Stajich
	 Email jason-at-bioperl-dot-org

perl v5.14.2							    2012-03-02						  BP_MAKE_MRNA_PROTEIN(1p)