debian man page for mincpik

MINCPIK(1)							 MINC User's Guide							MINCPIK(1)

NAME
       mincpik - generate images from minc files

SYNOPSIS
       mincpik [options] <infile>.mnc [<image.type>]

DESCRIPTION
       mincpik	generates  image  files  from MINC volumes using the Imagemagick convert utility. For a complete list of output file types see the
       convert man pages.

       Currently if there is a time dimension in the file the image will only produced from the first time point

General options
       -verbose
	      print out extra information

       -clobber
	      overwrite the output file if it exists already

       -fake  usually used in combination with -verbose to echo commands only

       -slice slice number to get (note this is in voxel co-ordinates)

       -scale scaling factor for resulting image, by default images are output at twice their original resolution

       -width autoscale the resulting image to have a fixed image width (in pixels)

       -depth bit-depth for resulting image 8 or 16 (MSB machines only)

       -title add a title to the resulting image, if just this option is specified the text used for the title is the  name  of  the  input  image
	      file.  -title_text specify the title text to use. This option must be used in conjunction with -title

       Image range and lookup table options

       -range min max
	      valid range of values to use from MINC file

       -image_range min max
	      range of image values to use for pixel intensity

       -auto_range
	      automatically determine image range using a 5 and 95% PcT. (histogram)

       -lookup arguments
	      arguments to pass to minclookup

Slicing options
       -transverse
	      get a transverse slice

       -axial synonym for transverse

       -coronal
	      get a coronal slice

       -sagittal
	      get a sagital slice

       -allthree
	      this option is deprecated, use -triplanar instead

Triplanar options
       -triplanar
	      create a triplanar view of the input MINC file

       -tilesize
	      pixel size for each image in a triplanar

       -sagittal_offset
	      offset the saggital slice from the centre in the triplanar

       -vertical
	      create a vertical triplanar series of images (this is the default)

       -horizontal
	      create a horizontal triplanar instead of a vertical one

Generic options for all commands:
       -help  Print summary of command-line options and abort.

AUTHOR
       Andrew Janke - <a.janke@gmail.com>

SEE ALSO
       minclookup(1), convert(1), display(1).

							   $Date: 2009-08-11 13:49:19 $ 						MINCPIK(1)