MINCPIK(1) MINC User's Guide MINCPIK(1)
NAME
mincpik - generate images from minc files
SYNOPSIS
mincpik [options] <infile>.mnc [<image.type>]
DESCRIPTION
mincpik generates image files from MINC volumes using the Imagemagick convert utility. For a complete list of output file types see the
convert man pages.
Currently if there is a time dimension in the file the image will only produced from the first time point
General options
-verbose
print out extra information
-clobber
overwrite the output file if it exists already
-fake usually used in combination with -verbose to echo commands only
-slice slice number to get (note this is in voxel co-ordinates)
-scale scaling factor for resulting image, by default images are output at twice their original resolution
-width autoscale the resulting image to have a fixed image width (in pixels)
-depth bit-depth for resulting image 8 or 16 (MSB machines only)
-title add a title to the resulting image, if just this option is specified the text used for the title is the name of the input image
file. -title_text specify the title text to use. This option must be used in conjunction with -title
Image range and lookup table options
-range min max
valid range of values to use from MINC file
-image_range min max
range of image values to use for pixel intensity
-auto_range
automatically determine image range using a 5 and 95% PcT. (histogram)
-lookup arguments
arguments to pass to minclookup
Slicing options
-transverse
get a transverse slice
-axial synonym for transverse
-coronal
get a coronal slice
-sagittal
get a sagital slice
-allthree
this option is deprecated, use -triplanar instead
Triplanar options
-triplanar
create a triplanar view of the input MINC file
-tilesize
pixel size for each image in a triplanar
-sagittal_offset
offset the saggital slice from the centre in the triplanar
-vertical
create a vertical triplanar series of images (this is the default)
-horizontal
create a horizontal triplanar instead of a vertical one
Generic options for all commands:
-help Print summary of command-line options and abort.
AUTHOR
Andrew Janke - <a.janke@gmail.com>
SEE ALSO
minclookup(1), convert(1), display(1).
$Date: 2009-08-11 13:49:19 $ MINCPIK(1)
