mincpik(1) [debian man page]
MINCPIK(1) MINC User's Guide MINCPIK(1) NAME
mincpik - generate images from minc files SYNOPSIS
mincpik [options] <infile>.mnc [<image.type>] DESCRIPTION
mincpik generates image files from MINC volumes using the Imagemagick convert utility. For a complete list of output file types see the convert man pages. Currently if there is a time dimension in the file the image will only produced from the first time point General options -verbose print out extra information -clobber overwrite the output file if it exists already -fake usually used in combination with -verbose to echo commands only -slice slice number to get (note this is in voxel co-ordinates) -scale scaling factor for resulting image, by default images are output at twice their original resolution -width autoscale the resulting image to have a fixed image width (in pixels) -depth bit-depth for resulting image 8 or 16 (MSB machines only) -title add a title to the resulting image, if just this option is specified the text used for the title is the name of the input image file. -title_text specify the title text to use. This option must be used in conjunction with -title Image range and lookup table options -range min max valid range of values to use from MINC file -image_range min max range of image values to use for pixel intensity -auto_range automatically determine image range using a 5 and 95% PcT. (histogram) -lookup arguments arguments to pass to minclookup Slicing options -transverse get a transverse slice -axial synonym for transverse -coronal get a coronal slice -sagittal get a sagital slice -allthree this option is deprecated, use -triplanar instead Triplanar options -triplanar create a triplanar view of the input MINC file -tilesize pixel size for each image in a triplanar -sagittal_offset offset the saggital slice from the centre in the triplanar -vertical create a vertical triplanar series of images (this is the default) -horizontal create a horizontal triplanar instead of a vertical one Generic options for all commands: -help Print summary of command-line options and abort. AUTHOR
Andrew Janke - <a.janke@gmail.com> SEE ALSO
minclookup(1), convert(1), display(1). $Date: 2009-08-11 13:49:19 $ MINCPIK(1)
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MINCMAKEVECTOR(1) MINC User's Guide MINCMAKEVECTOR(1) NAME
mincmakevector - convert a list of scalar minc files into one vector file SYNOPSIS
mincmakevector [<options>] <in>.mnc [...] <out>.mnc DESCRIPTION
Mincmakevector converts a list of scalar minc files into one vector minc file. A vector minc file is one that contains the dimension vec- tor_dimension as the fastest varying dimension of the image data and represents vector data at each voxel such as RGB images or gradient volumes. A scalar minc file does not contain the vector dimension and represents grayscale or intensity data. OPTIONS
Note that options can be specified in abbreviated form (as long as they are unique) and can be given anywhere on the command line. General options -2 Create a MINC 2.0 format output file. -clobber Overwrite an existing file. -noclobber Don't overwrite an existing file (default). -no_clobber Synonym for -noclobber. -verbose Print out progress information for each chunk of data copied (default). -quiet Do not print out progress information. -buffer_size size Specify the maximum size of the internal buffers (in kbytes). Default is 10 MB. -filetype Create an output file with the same type as the first input file (default). -byte Store output voxels as 8-bit integers. -short Store output voxels as 16-bit integers. -int Store output voxels as 32-bit integers -long Superseded by -int. -float Store output voxels as 32-bit floating point numbers. -double Store output voxels as 64-bit floating point numbers. -signed Create an output file with data stored in a signed type. This only has an effect if the one of the -byte, -short or -int options is specified. -unsigned Create an output file with data stored in an unsigned type. This only has an effect if the one of the -byte, -short or -int options is specified. -valid_range min max Create an output file with integer data stored in the specified restricted range. This only has an effect if the one of the -byte, -short or -int options is specified. Generic options for all commands: -help Print summary of command-line options and exit. -version Print the program's version number and exit. EXAMPLES
To convert files containing red, green and blue colour components into an RGB file: mincmakevector red.mnc green.mnc blue.mnc rgb.mnc AUTHOR
Peter Neelin COPYRIGHTS
Copyright 1997 by Peter Neelin $Date: 2004-05-20 21:52:08 $ MINCMAKEVECTOR(1)