LINKMAP(1) General Commands Manual LINKMAP(1)NAME
linkmap - calculates location scores of one locus against a fixed map of other loci
SYNOPSIS
linkmap [options] ipedfile.dat pedfile.dat
DESCRIPTION
This manual page documents briefly the linkmap command. In fact this is a very raw intend to provide a manpage because the Debian
GNU/Linux distribution requires each program to have a manpage. Any enhancement would be greatly apreciated.
linkmap is part of the fastlink software package.
OPTIONS
There might be options but I did not found any information about them. Please foreward any information about them to <tille@debian.org>
SEE ALSO ilink(1), lodscore(1), mlink(1), unknown(1).
Word-Wide-Web:
http://www.ncbi.nlm.nih.gov/CBBResearch/Schaffer/fastlink.html
AUTHOR :
Alejandro Schaeffer <schaffer@helix.nih.gov> and others
This manual page was written by Andreas Tille <tille@debian.org>, for the Debian GNU/Linux system (but may be used by others).
April 15, 2003 LINKMAP(1)
Check Out this Related Man Page
LODSCORE(1) General Commands Manual LODSCORE(1)NAME
lodscore - compares likelihoods at locally optimal theta
SYNOPSIS
lodscore [options] ipedfile.dat pedfile.dat
DESCRIPTION
This manual page documents briefly the lodscore command. In fact this is a very raw intend to provide a manpage because the Debian
GNU/Linux distribution requires each program to have a manpage. Any enhancement would be greatly apreciated.
lodscore is part of the fastlink software package.
Lodscore compares -2log(likelihood) at the locally optimal theta to -2log(likelihood) at a theta that is 1/2 in every component (i.e. each
locus unlinked to all the rest). In LINKAGE ILINK more likelihood function evaluations are done after the last printed iteration line, but
these likelihood function evaluations are unnecessary (see paper2.ps from the fastlink-doc Debian package for more details).
OPTIONS
There might be options but I did not found any information about them. Please foreward any information about them to <tille@debian.org>
SEE ALSO ilink(1), linkmap(1), mlink(1), unknown(1).
Word-Wide-Web:
http://www.ncbi.nlm.nih.gov/CBBResearch/Schaffer/fastlink.html
AUTHOR :
Alejandro Schaeffer <schaffer@helix.nih.gov> and others
This manual page was written by Andreas Tille <tille@debian.org>, for the Debian GNU/Linux system (but may be used by others).
April 15, 2003 LODSCORE(1)
Hi, i have a file like this:
A1
kdfjdljfdkljfdlf
A2
lfjdlfkjddkjf
A3
***no hit***
A4
ldjfldjfdk
A5
***no hit***
A6
jldfjdlfjdlkfjd
I want to remove the lines "***no hit*** and their above line to get an output file like this: (11 Replies)
Not my story, but interesting enough to be worth posting here IMHO. (Original is here)
The following is the 500-mile email story in the form it originally appeared, in a post to sage-members on Sun, 24 Nov 2002.:
From trey@sage.org Fri Nov 29 18:00:49 2002
Date: Sun, 24 Nov 2002 21:03:02... (3 Replies)
Hi everyone,
I know the following questions are noobish questions but I am asking them because I am confused about the basics of history behind UNIX and LINUX.
Ok onto business, my questions are-:
Was/Is UNIX ever an open source operating system ?
If UNIX was... (21 Replies)
Hi gurus,
I have a weird requirement. I need to convert the number to english lecture.
I have 1.2 ....19 numbers
I need to convert to first second third fourth, fifth, sixth...
Is there any way convert it using unix command?
thanks in advance. (8 Replies)
Hi,
Humorous UNIX Commands shows a fun way of using echo and dc to sort of obfuscate a string.
% echo 'sasb3135071790101768542287578439snlbxq'|dc
GET A LIFE!
I am just wanting to know if there is a way to sort of use dc and echo to print out an obfuscated/garbled string instead... (3 Replies)
Hi All,
Having recently started a new job, a Data Center Migration in fact I have been tasked with looking at some of the older Solaris boxes when I came across this little gem.
nismas# uname -a
SunOS nismas 5.5.1 Generic_103640-27 sun4u sparc SUNW,Ultra-1
nismas# uptime
10:37am up 2900... (2 Replies)
For any SunOS 5.XX release, it appears prior to the "login:" prompt (as if a "uname" command is run).
Would anyone know where that initial display of SunOS release comes from upon a remote login and how I can stop if from displaying?
Thank you (4 Replies)
I am trying to remove each line in which $2 is FP or RFP. I believe the below will remove one instance but not both. Thank you :).
file
12
123 FP
11
10 RFP
awk
awk -F'\t' '
$2 != "FP"' file
desired output
12
11 (6 Replies)
Hi everybody,
Which Unix base OS have best performance for HOST virtualization?
I tested SmartOS but it needs another OS to connect remotely!
Thanks in advance. (11 Replies)
I have this file:
>ID1
AA
>ID2
TTTTTT
>ID-3
AAAAAAAAA
>ID4
TTTTTTGGAGATCAGTAGCAGATGACAG-GGGGG-TGCACCCC
Add I am trying to use this script to output sequences longer than 15 characters:
sed -r '/^>/N;{/^.{,15}$/d}'
The desire output would be this:
>ID4... (8 Replies)
Hi,
I am having contents in a file like below,
cat testfile
rpool/swap
rpool/swap14
rpool/swap2
rpool/swap3
I want to sort the above contents like,
rpool/swap
rpool/swap2
rpool/swap3
rpool/swap14
I have tried in this way, (7 Replies)
Morning All
So, I am starting looking into the world of UNIX for a new job (luckily not my primary function!) and I am looking to get stared. Like anything I seem to learn best by trying things out first in an environment but I have a key question:
Currently I use Oracle VirtualBox, can... (8 Replies)