Bio::Tools::Run::AnalysisFactory::soap(3pm) User Contributed Perl Documentation Bio::Tools::Run::AnalysisFactory::soap(3pm)
NAME
Bio::Tools::Run::AnalysisFactory::soap - A SOAP-based access to the list of analysis tools
SYNOPSIS
Do not use this object directly, it is recommended to access it and use it through the Bio::Tools::Run::AnalysisFactory module:
use Bio::Tools::Run::AnalysisFactory;
my $list = Bio::Tools::Run::AnalysisFactory->new(-access => 'soap')
->available_analyses;
print join ("
", @$list) . "
";
DESCRIPTION
All public methods are documented in the interface module "Bio::Factory::AnalysisI".
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
http://redmine.open-bio.org/projects/bioperl/
AUTHOR
Martin Senger (martin.senger@gmail.com)
COPYRIGHT
Copyright (c) 2003, Martin Senger and EMBL-EBI. All Rights Reserved.
This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.
DISCLAIMER
This software is provided "as is" without warranty of any kind.
SEE ALSO
o http://www.ebi.ac.uk/soaplab/Perl_Client.html
BUGS AND LIMITATIONS
None known at the time of writing this.
APPENDIX
The main documentation details are in "Bio::Factory::AnalysisI".
_initialize
Usage : my $factory = Bio::Tools::Run::AnalysisFactory->new(@args);
(_initialize is internally called from the 'new()' method)
Returns : nothing interesting
Args : This module recognises and uses following arguments:
-location
-httpproxy
-soap
Additionally, the main module Bio::Tools::Run::AnalysisFactory
recognises also:
-access
It populates calling object with the given arguments, and then - for some attributes and only if they are not yet populated - it assigns
some default values.
This is an actual new() method (except for the real object creation and its blessing which is done in the parent class Bio::Root::Root in
method _create_object).
Note that this method is called always as an object method (never as a class method) - and that the object who calls this method may
already be partly initiated (from Bio::Tools::Run::AnalysisFactory::new method); so if you need to do some tricks with the 'class
invocation' you need to change Bio::Tools::Run::AnalysisFactory new method, not this one.
-location
A URL (also called an endpoint) defining where is located a Web Service functioning for this object.
Default is "http://www.ebi.ac.uk/soaplab/services" (a service running at European Bioinformatics Institute on top of most of the EMBOSS
analyses, and on top of few others).
For example, if you run your own Web Service using Java(TM) Apache Axis toolkit, the location might be something like
"http://localhost:8080/axis/services".
-httpproxy
In addition to the location parameter, you may need to specify also a location/URL of an HTTP proxy server (if your site requires one).
The expected format is "http://server:port". There is no default value.
-soap
Defines your own SOAP::Lite object. Useful if you need finer-grained access to many features and attributes of the wonderful Paul
Kulchenko's module.
VERSION and Revision
Usage : print $Bio::Tools::Run::AnalysisFactory::soap::VERSION;
print $Bio::Tools::Run::AnalysisFactory::soap::Revision;
perl v5.12.3 2011-06-18 Bio::Tools::Run::AnalysisFactory::soap(3pm)