bio::seqfeature::gene::poly_a_site(3pm) [debian man page]
Bio::SeqFeature::Gene::Poly_A_site(3pm) User Contributed Perl Documentation Bio::SeqFeature::Gene::Poly_A_site(3pm)NAME
Bio::SeqFeature::Gene::Poly_A_site - poly A feature
SYNOPSIS
Give standard usage here
DESCRIPTION
Inherits from Bio::SeqFeature::Gene::NC_Feature.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
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Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - David Block
Email dblock@gene.pbi.nrc.ca
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
perl v5.14.2 2012-03-02 Bio::SeqFeature::Gene::Poly_A_site(3pm)
Check Out this Related Man Page
Bio::SeqFeature::Gene::ExonI(3pm) User Contributed Perl Documentation Bio::SeqFeature::Gene::ExonI(3pm)NAME
Bio::SeqFeature::Gene::ExonI - Interface for a feature representing an exon
SYNOPSIS
See documentation of methods.
DESCRIPTION
A feature representing an exon. An exon in this definition is transcribed and at least for one particular transcript not spliced out of the
pre-mRNA. However, it does not necessarily code for amino acid.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably
to one of the Bioperl mailing lists. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Hilmar Lapp
Email hlapp@gmx.net
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
is_coding
Title : is_coding
Usage : if($exon->is_coding()) {
# do something
}
Function: Whether or not the exon codes for amino acid.
Returns : TRUE if the object represents a feature translated into protein,
and FALSE otherwise.
Args :
cds
Title : cds()
Usage : $cds = $exon->cds();
Function: Get the coding sequence of the exon as a sequence object.
The returned sequence object must be in frame 0, i.e., the first
base starts a codon.
An implementation may return undef, indicating that a coding
sequence does not exist, e.g. for a UTR (untranslated region).
Returns : A L<Bio::PrimarySeqI> implementing object.
Args :
perl v5.14.2 2012-03-02 Bio::SeqFeature::Gene::ExonI(3pm)
Is it possible in awk to parse a webpage (EDAR Gene Sequencing - Genetic Testing Company | The DNA Diagnostic Experts | GeneDx), the source code is attached.
<title> EDAR Gene Sequencing
<dt>Test Code:</dt>
<dd>156 </dd>
<dt>Turnaround Time:</dt>
<dd>6-8 weeks </dd>
... (4 Replies)