Bio::FeatureIO::gtf(3pm) User Contributed Perl Documentation Bio::FeatureIO::gtf(3pm)NAME
Bio::FeatureIO::gtf - read write features in GTF format
SYNOPSIS
Bio::FeatureIO::gff
DESCRIPTION
GTF, is also known as GFF v2.5. This class is simply a subclass of Bio::FeatureIO::gff that initializes with -version => 2.5.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Allen Day
Email allenday@ucla.edu
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
perl v5.14.2 2012-03-02 Bio::FeatureIO::gtf(3pm)
Check Out this Related Man Page
Bio::Coordinate::ResultI(3pm) User Contributed Perl Documentation Bio::Coordinate::ResultI(3pm)NAME
Bio::Coordinate::ResultI - Interface to identify coordinate mapper results
SYNOPSIS
# not to be used directly
DESCRIPTION
ResultI identifies Bio::LocationIs returned by Bio::Coordinate::MapperI implementing classes from other locations.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing lists Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Heikki Lehvaslaiho
Email: heikki-at-bioperl-dot-org
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
perl v5.14.2 2012-03-02 Bio::Coordinate::ResultI(3pm)
Hi, my problem is that I have two files. File no. 1 is a gff text file (say gi1) that has gene information like :
********************
gene 39389788..39395643
/gene="RPSA"
/note="Derived by automated computational analysis using
... (2 Replies)
Hello,
if this input:
gff art ex 2833 2966 . + . ID=A_172736
gff art ex 2976 3165 . + . ID=A_172736
gff art ex 3195 3941 . + . ID=A_713953
gff art ex 8615 8753 . + . ... (5 Replies)