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ace::browser::sitedefs(3pm) [debian man page]

Ace::Browser::SiteDefs(3pm)				User Contributed Perl Documentation			       Ace::Browser::SiteDefs(3pm)

NAME
Ace::Browser::SiteDefs - Access to AceBrowser configuration files SYNOPSIS
use Ace; use Ace::Browser::AceSubs; use CGI qw(:standard); my $configuration = Configuration; my $docroot = $configuration->Docroot; my @pictures = @{$configuration->Pictures}; my %displays = %{$configuration->Displays}; my $coderef = $configuration->Url_mapper; $coderef->($param1,$param2); DESCRIPTION
Ace::Browser::SiteDefs evaluates an AceBrowser configuration file and returns a configuration object ("config object" for short). A config object is a bag of dynamically-generated methods, derived from the scalar variables, arrays, hashes and subroutines in the configuration file. The config object methods are a canonicalized form of the configuration file variables, in which the first character of the method is uppercase, and subsequent characters are lower case. For example, if the configuration variable was $ROOT, the method will be $config_object->Root. Working with Configuration Objects To fetch a configuration object, use the Ace::Browser::AceSubs Configuration() function. This will return a configuration object for the current database: $config_object = Configuration(); Thereafter, it's just a matter of making the proper method calls. If the Configuration file is a.... The method call returns a... ---------------------------------- ---------------------------- Scalar variable Scalar Array variable Array reference Hash variable Hash reference Subroutine Code reference If a variable is not defined, the corresponding method will return undef. BUGS
Please report them. SEE ALSO
Ace::Object, Ace::Browser::AceSubs, Ace::Browsr::SearchSubs, the README.ACEBROWSER file. AUTHOR
Lincoln Stein <lstein@cshl.org>. Copyright (c) 2001 Cold Spring Harbor Laboratory This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for disclaimers of warranty. perl v5.14.2 2006-11-01 Ace::Browser::SiteDefs(3pm)

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Ace::Graphics::Glyph::transcript(3pm)			User Contributed Perl Documentation		     Ace::Graphics::Glyph::transcript(3pm)

NAME
Ace::Graphics::Glyph::transcript - The "gene" glyph SYNOPSIS
See L<Ace::Graphics::Panel> and L<Ace::Graphics::Glyph>. DESCRIPTION
This glyph draws a series of filled rectangles connected by up-angled connectors or "hats". The rectangles indicate exons; the hats are introns. The direction of transcription is indicated by a small arrow at the end of the glyph, rightward for the + strand. The feature must respond to the exons() and optionally introns() methods, or it will default to the generic display. Implied introns (not returned by the introns() method) are drawn in a contrasting color to explicit introns. OPTIONS In addition to the common options, the following glyph-specific option is recognized: Option Description Default ------ ----------- ------- -implied_intron_color The color to use for gaps gray not returned by the introns() method. -draw_arrow Whether to draw arrowhead true indicating direction of transcription. BUGS
Please report them. SEE ALSO
Ace::Sequence, Ace::Sequence::Feature, Ace::Graphics::Panel, Ace::Graphics::Track, Ace::Graphics::Glyph::anchored_arrow, Ace::Graphics::Glyph::arrow, Ace::Graphics::Glyph::box, Ace::Graphics::Glyph::primers, Ace::Graphics::Glyph::segments, Ace::Graphics::Glyph::toomany, Ace::Graphics::Glyph::transcript, AUTHOR
Lincoln Stein <lstein@cshl.org>. Copyright (c) 2001 Cold Spring Harbor Laboratory This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for disclaimers of warranty. perl v5.14.2 2001-05-22 Ace::Graphics::Glyph::transcript(3pm)
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