Linux and UNIX Man Pages

Linux & Unix Commands - Search Man Pages

pgasetintegerinitrange(2) [debian man page]

PGASetIntegerInitRange(2)					      PGAPack						 PGASetIntegerInitRange(2)

NAME
PGASetIntegerInitRange - sets a flag to tell the initialization routines to set each integer-valued gene to a value chosen randomly from the interval given by an upper and lower bound. DESCRIPTION
No string initialization is done by this call. INPUT PARAMETERS
ctx - context variable min - array of lower bounds that define the interval the gene is initialized from max - array of upper bounds that define the interval the gene is initialized from OUTPUT PARAMETERS
none SYNOPSIS
#include "pgapack.h" void PGASetIntegerInitRange(ctx, min, max) PGAContext *ctx int *min int *max LOCATION
integer.c EXAMPLE
Set the initialization routines to select a value for gene i uniformly randomly from the interval [0,i]. Assumes all strings are of the same length. PGAContext *ctx; int *low, *high, stringlen, i; : stringlen = PGAGetStringLength(ctx); low = (int *) malloc(stringlen*sizeof(int)); high = (int *) malloc(stringlen*sizeof(int)); for(i=0;i<stringlen;i++) { low[i] = 0; high[i] = i } PGASetIntegerInitRange(ctx, low, high); 05/01/95 PGASetIntegerInitRange(2)

Check Out this Related Man Page

PGACreate(8)							      PGAPack							      PGACreate(8)

NAME
PGACreate - creates an uninitialized context variable. The Fortran version of this function call contains only the last three arguments INPUT PARAMETERS
argc - address of the count of the number of command line arguments. argv - array of command line arguments. datatype - the data type used for the strings. Must be one of PGA_DATATYPE_BINARY, PGA_DATATYPE_CHARACTER, PGA_DATATYPE_INTEGER, PGA_DATATYPE_REAL, or PGA_DATATYPE_USER binary -valued, character-valued, integer-valued, real -valued, or a user-defined datatype, respectively. len - the string length (number of genes). maxormin - the direction of optimization. Must be one of PGA_MAXIMIZE or PGA_MINIMIZE for maximization or minimization, respectively. OUTPUT PARAMETERS
none SYNOPSIS
#include "pgapack.h" PGAContext * PGACreate(argc, argv, datatype, len, maxormin) int *argc char **argv int datatype int len int maxormin LOCATION
create.c EXAMPLE
Example: In C: void main(int argc, char **argv) { PGAContext *ctx; : ctx = PGACreate(&argc, argv, PGA_DATATYPE_BINARY, 100, PGA_MAXIMIZE); : // Set options here : PGASetUp(ctx); : // Run the GA here : PGADestroy(ctx); } In FORTRAN: integer ctx : ctx = PGACreate(PGA_DATATYPE_BINARY, 100, PGA_MAXIMIZE) : c Set options here : call PGASetUp(ctx) : c Run the GA here : call PGADestroy(ctx) stop end 05/01/95 PGACreate(8)
Man Page

13 More Discussions You Might Find Interesting

1. Programming

array bounds and mem leak tool

Is there any freeware to find out array bounds static and dynamic ways in Solaris 10. (1 Reply)
Discussion started by: satish@123
1 Replies

2. Shell Programming and Scripting

To retrieve gene name & function thorugh Genbank id (gi|9910297)

Hi , I have list of genbank id's and ref number in this format. gi|9910297|ref|NM_019974.1| I want to retrive the gene name and fuction for each genbank list. I have around 1300 gi numbers in my excel sheet. So anybody can help me to retrive the information from NCBI through perl script... (0 Replies)
Discussion started by: shibujohn82
0 Replies

3. Shell Programming and Scripting

Script to search and extract the gene sub-location from gff file.

Hi, my problem is that I have two files. File no. 1 is a gff text file (say gi1) that has gene information like : ******************** gene 39389788..39395643 /gene="RPSA" /note="Derived by automated computational analysis using ... (2 Replies)
Discussion started by: reena2305
2 Replies

4. Shell Programming and Scripting

Data stream between min and max

Hi, I have a text file containing numbers. There are up to 6 numbers per row and I need to read them, check if they are 0 and if they are not zero check if they are within a given interval (min,max). If they exceed the max or min they should be set to max or min respectively, if they are in the... (4 Replies)
Discussion started by: f_o_555
4 Replies

5. Shell Programming and Scripting

Counting entries in a file

Hi, I have a very large two column log file in the following format: # Epoch Time IP Address 899726401 112.254.1.0 899726401 112.254.1.0 899726402 154.162.38.0 899726402 160.114.12.0 899726402 165.161.7.0 899726403 ... (39 Replies)
Discussion started by: sajal.bhatia
39 Replies

6. UNIX for Dummies Questions & Answers

Breaking a fasta formatted file into multiple files containing each gene separately

Hey, I've been trying to break a massive fasta formatted file into files containing each gene separately. Could anyone help me? I've tried to use the following code but i've recieved errors every time: for i in *.rtf.out do awk '/^>/{f=++d".fasta"} {print > $i.out}' $i done (1 Reply)
Discussion started by: Ann Mc Cartney
1 Replies

7. Shell Programming and Scripting

Print @array content to a file

Hi, as the title, I have an array @f_lines with gene information in it. How can I put the content of @f_lines into a file so that I can read it? I tried this: open(OUTPUT, "file"); # put gene information in this file; @f_lines = ("gene1", "gene2", "gene3"...); # gene information; print... (3 Replies)
Discussion started by: lyni2ULF
3 Replies

8. Shell Programming and Scripting

extract the max value category

Hi, I have a file and I want the category for each row to be its highest value. gene highest medium lower lowest ABC 20 30 50 70 DEF 90 20 60 0 o/p gene highest medium lower lowest category ABC... (6 Replies)
Discussion started by: Diya123
6 Replies

9. UNIX for Dummies Questions & Answers

How to delete text between two characters in line?

Hi, I have a large text file with the following format: >gi|347545744|gb|JN204951.1| Dismorphia spio voucher 5 ATCAAATTCCTTCCTCTCCTTAAA >gi|17544664774|gb|WN204922.32| Rodapara nigens gene region CCGGGCAAATTCCTTCCTCTCCTTAAA >gi|555466400|gb|SG255122.8| Bombyx mandariana genbank 3... (1 Reply)
Discussion started by: euspilapteryx
1 Replies

10. Shell Programming and Scripting

Replace only few string

Hi, I have a file with 1st column to be gene symbols and rest of the columns its expression value. for each gene symbol if the value if other than NA replace it with the gene symbol input file: RPS6 14.26939 13.7448 14.18972 13.45445 14.47969 13.60643 13.5248... (7 Replies)
Discussion started by: Diya123
7 Replies

11. Shell Programming and Scripting

Insert id from same block

Hello all, Please help modify my file. I want to pick up the ID value when the 3rd column is either gene or protein_coding_gene and place the ID in the gene_id attribute corresponding rows which has the the keyword exon in the third column. Input file 10 ensembl gene 195359 ... (6 Replies)
Discussion started by: gina.lizar
6 Replies

12. Shell Programming and Scripting

awk to average target and gene

I am trying to modify the awk below to include the gene name ($5) for each target and can not seem to do so. Also, I'm not sure the calculation is right (average of all targets that are the same is $4 using the values in $7)? Thank you :). awk '{if((NR>1)&&($4!=last)){printf("%s\t%f\t%s\n",... (1 Reply)
Discussion started by: cmccabe
1 Replies

13. Shell Programming and Scripting

How to select lines randomly without replacement in UNIX?

Dear Folks I have one column of 15000 lines and want to select randomly 5000 of them in five different times without replacement. I am aware that command 'shuf' and 'sort -R' could select randomly those lines but I am not sure how could I avoid the replacement of selection line. Does anyone have... (10 Replies)
Discussion started by: sajmar
10 Replies