PGASetIntegerInitRange(2) PGAPack PGASetIntegerInitRange(2)NAME
PGASetIntegerInitRange - sets a flag to tell the initialization routines to set each integer-valued gene to a value chosen randomly from
the interval given by an upper and lower bound.
DESCRIPTION
No string initialization is done by this call.
INPUT PARAMETERS
ctx - context variable
min - array of lower bounds that define the interval the gene is initialized from
max - array of upper bounds that define the interval the gene is initialized from
OUTPUT PARAMETERS
none
SYNOPSIS
#include "pgapack.h"
void PGASetIntegerInitRange(ctx, min, max)
PGAContext *ctx
int *min
int *max
LOCATION
integer.c
EXAMPLE
Set the initialization routines to select a value for gene i
uniformly randomly from the interval [0,i]. Assumes all strings
are of the same length.
PGAContext *ctx;
int *low, *high, stringlen, i;
:
stringlen = PGAGetStringLength(ctx);
low = (int *) malloc(stringlen*sizeof(int));
high = (int *) malloc(stringlen*sizeof(int));
for(i=0;i<stringlen;i++) {
low[i] = 0;
high[i] = i
}
PGASetIntegerInitRange(ctx, low, high);
05/01/95 PGASetIntegerInitRange(2)
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PGACreate(8) PGAPack PGACreate(8)NAME
PGACreate - creates an uninitialized context variable. The Fortran version of this function call contains only the last three arguments
INPUT PARAMETERS
argc - address of the count of the number of command line arguments.
argv - array of command line arguments.
datatype
- the data type used for the strings. Must be one of PGA_DATATYPE_BINARY, PGA_DATATYPE_CHARACTER, PGA_DATATYPE_INTEGER,
PGA_DATATYPE_REAL, or PGA_DATATYPE_USER
binary -valued, character-valued, integer-valued,
real -valued, or a user-defined datatype, respectively.
len - the string length (number of genes).
maxormin
- the direction of optimization. Must be one of PGA_MAXIMIZE or PGA_MINIMIZE for maximization or minimization, respectively.
OUTPUT PARAMETERS
none
SYNOPSIS
#include "pgapack.h"
PGAContext * PGACreate(argc, argv, datatype, len, maxormin)
int *argc
char **argv
int datatype
int len
int maxormin
LOCATION
create.c
EXAMPLE
Example:
In C:
void main(int argc, char **argv) {
PGAContext *ctx;
:
ctx = PGACreate(&argc, argv, PGA_DATATYPE_BINARY, 100, PGA_MAXIMIZE);
:
// Set options here
:
PGASetUp(ctx);
:
// Run the GA here
:
PGADestroy(ctx);
}
In FORTRAN:
integer ctx
:
ctx = PGACreate(PGA_DATATYPE_BINARY, 100, PGA_MAXIMIZE)
:
c Set options here
:
call PGASetUp(ctx)
:
c Run the GA here
:
call PGADestroy(ctx)
stop
end
05/01/95 PGACreate(8)
Hi ,
I have list of genbank id's and ref number in this format.
gi|9910297|ref|NM_019974.1|
I want to retrive the gene name and fuction for each genbank list. I have around 1300 gi numbers in my excel sheet.
So anybody can help me to retrive the information from NCBI through perl script... (0 Replies)
Hi, my problem is that I have two files. File no. 1 is a gff text file (say gi1) that has gene information like :
********************
gene 39389788..39395643
/gene="RPSA"
/note="Derived by automated computational analysis using
... (2 Replies)
Hi,
I have a text file containing numbers. There are up to 6 numbers per row and I need to read them, check if they are 0 and if they are not zero check if they are within a given interval (min,max). If they exceed the max or min they should be set to max or min respectively, if they are in the... (4 Replies)
Hi,
I have a very large two column log file in the following format:
# Epoch Time IP Address
899726401 112.254.1.0
899726401 112.254.1.0
899726402 154.162.38.0
899726402 160.114.12.0
899726402 165.161.7.0
899726403 ... (39 Replies)
Hey,
I've been trying to break a massive fasta formatted file into files containing each gene separately. Could anyone help me? I've tried to use the following code but i've recieved errors every time:
for i in *.rtf.out
do
awk '/^>/{f=++d".fasta"} {print > $i.out}' $i
done (1 Reply)
Hi, as the title, I have an array @f_lines with gene information in it. How can I put the content of @f_lines into a file so that I can read it?
I tried this:
open(OUTPUT, "file"); # put gene information in this file;
@f_lines = ("gene1", "gene2", "gene3"...); # gene information;
print... (3 Replies)
Hi,
I have a file and I want the category for each row to be its highest value.
gene highest medium lower lowest
ABC 20 30 50 70
DEF 90 20 60 0
o/p
gene highest medium lower lowest category
ABC... (6 Replies)
Hi,
I have a large text file with the following format:
>gi|347545744|gb|JN204951.1| Dismorphia spio voucher 5
ATCAAATTCCTTCCTCTCCTTAAA
>gi|17544664774|gb|WN204922.32| Rodapara nigens gene region
CCGGGCAAATTCCTTCCTCTCCTTAAA
>gi|555466400|gb|SG255122.8| Bombyx mandariana genbank 3... (1 Reply)
Hi,
I have a file with 1st column to be gene symbols and rest of the columns its expression value. for each gene symbol if the value if other than NA replace it with the gene symbol
input file:
RPS6 14.26939 13.7448 14.18972 13.45445 14.47969 13.60643 13.5248... (7 Replies)
Hello all,
Please help modify my file. I want to pick up the ID value when the 3rd column is either gene or protein_coding_gene and place the ID in the gene_id attribute corresponding rows which has the the keyword exon in the third column.
Input file
10 ensembl gene 195359 ... (6 Replies)
I am trying to modify the awk below to include the gene name ($5) for each target and can not seem to do so. Also, I'm not sure the calculation is right (average of all targets that are the same is $4 using the values in $7)? Thank you :).
awk '{if((NR>1)&&($4!=last)){printf("%s\t%f\t%s\n",... (1 Reply)
Dear Folks
I have one column of 15000 lines and want to select randomly 5000 of them in five different times without replacement. I am aware that command 'shuf' and 'sort -R' could select randomly those lines but I am not sure how could I avoid the replacement of selection line. Does anyone have... (10 Replies)