BP_DBSPLIT(1p) User Contributed Perl Documentation BP_DBSPLIT(1p)NAME
dbsplit - script to split an input set of database(s) into smaller pieces
SYNOPSIS
dbsplit.PLS --size 50 [-i inputfile] [-if inputformat] [-of outputformat]
[--prefix outputprefix] [ < file1 file 2 OR file1 file2]
DESCRIPTION
This script will take as input a list of filenames or a single file or from STDIN a sequence database and split the database into separate
files of X numbers of sequences. You specify X with the "--size/-s" parameter. The input and output sequence format is any that is
supported by bioperl (fasta,embl,genbank,gcg, swissprot, etc).
You can specify the input data either as a single file with -i filename, or as a single file as an argument like
% dbsplit file1 file2
or as a list of sequence data with
% cat file1 file2 file3 | dbsplit
You'll want to use the "--prefix" to specify what the output prefix will be.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR
Jason Stajich, jason-at-bioperl-dot-org
perl v5.14.2 2012-03-02 BP_DBSPLIT(1p)
Check Out this Related Man Page
BP_AACOMP(1p) User Contributed Perl Documentation BP_AACOMP(1p)NAME
aacomp - amino acid composition of protein sequences
SYNOPSIS
aacomp [-f/--format FORMAT] [-h/--help] filename
or
aacomp [-f/--format FORMAT] < filename
or
aacomp [-f/--format FORMAT] -i filename
DESCRIPTION
This scripts prints out the count of amino acids over all protein sequences from the input file.
OPTIONS
The default sequence format is fasta.
The sequence input can be provided using any of the three methods:
unnamed argument
aacomp filename
named argument
aacomp -i filename
standard input
aacomp < filename
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Jason Stajich
Email jason@bioperl.org
HISTORY
Based on aacomp.c from an old version of EMBOSS
perl v5.14.2 2012-03-02 BP_AACOMP(1p)
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