MINCEDIT(1) MINC User's Guide MINCEDIT(1)NAME
mincedit - edit a MINC file header
SYNOPSIS
mincedit mincfile [editor]
DESCRIPTION
mincedit converts the MINC file header to a text version which you can edit in your favourite editor. If any changes are made, the MINC
file is regenerated and the image data is copied. The header is presented in netCDF's common data form language (CDL).
-help Print summary of command-line options and exit.
AUTHOR
Peter Neelin and Andrew Janke
COPYRIGHT
Copyright (C) 1993 by Peter Neelin rewrite 2008 Andrew Janke - a.janke@gmail.com
SEE ALSO mincdump(1),mincgen(1)
$Date: 2008-01-09 14:42:24 $ MINCEDIT(1)
Check Out this Related Man Page
XFM2DEF(1) MINC User's Guide XFM2DEF(1)NAME
xfm2def - convert a MNI transform file to a deformation volume
SYNOPSIS
xfm2def [options] input.xfm def_vol.mnc
DESCRIPTION
xfm2def takes an input transform input.xfm that can consist of a series of concatenated transforms in a single xfm file and converts this
into a single deformation volume that is output as def_vol.mnc. Note that the output is not a tranform file itself, you can then make use
of this volume in a MINC tranform by creating an .xfm file as such:
MNI Transform File
Transform_Type = Grid_Transform;
Displacement_Volume = def_vol.mnc;
The output resolution and sampling of the deformation grid must be specified or a default size will be used. (100x100x100 1mm steps centred
around the origin).
OPTIONS -help Print summary of command-line options and exit.
-version
Print the program's version number and exit.
-verbose
Print out extra progress information while running.
-clobber
Overwrite any existing output file
-xnelements nx
Number of elements along the xspace dimension.
-ynelements ny
Number of elements along the yspace dimension.
-znelements nz
Number of elements along the zspace dimension.
-xstep xstep
Step between voxels along the xspace dimension.
-ystep ystep
Step between voxels along the yspace dimension.
-zstep zstep
Step between voxels along the zspace dimension.
-xstart xstart
Position of centre of first voxel along the xspace dimension.
-ystart ystart
Position of centre of first voxel along the yspace dimension.
-zstart zstart
Position of centre of first voxel along the zspace dimension.
-xdircos x1 x2 x3
Direction cosines for the xspace dimension.
-ydircos y1 y2 y3
Direction cosines for the yspace dimension.
-zdircos z1 z2 z3
Direction cosines for the zspace dimension.
AUTHOR
Andrew Janke
COPYRIGHTS
Copyright (C) 2010 Andrew Janke - a.janke@gmail.com
$Date: 2010-08-11 04:06:42 $ XFM2DEF(1)
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