grdtrend(1) [debian man page]
GRDTREND(l) GRDTREND(l) NAME
grdtrend - Fit and/or remove a polynomial trend in a grd file SYNOPSIS
grdtrend grdfile -Nn_model[r] [ -Ddiff.grd ] [ -Ttrend.grd ] [ -V ] [ -Wweight.grd ] DESCRIPTION
grdtrend reads a 2-D gridded file and fits a low-order polynomial trend to these data by [optionally weighted] least-squares. The trend surface is defined by: m1 + m2*x + m3*y + m4*x*y + m5*x*x + m6*y*y + m7*x*x*x + m8*x*x*y + m9*x*y*y + m10*y*y*y. The user must specify -Nn_model, the number of model parameters to use; thus, -N4 fits a bilinear trend, -N6 a quadratic surface, and so on. Optionally, append r to the -N option to perform a robust fit. In this case, the program will iteratively reweight the data based on a robust scale estimate, in order to converge to a solution insensitive to outliers. This may be handy when separating a "regional" field from a "residual" which should have non-zero mean, such as a local mountain on a regional surface. If data file has values set to NaN, these will be ignored during fitting; if output files are written, these will also have NaN in the same locations. No space between the option flag and the associated arguments. grdfile The name of a 2-D binary grd file. -N [r]n_model sets the number of model parameters to fit. Prepend r for robust fit. OPTIONS
No space between the option flag and the associated arguments. -D Write the difference (input data - trend) to the file diff.grd. -T Write the fitted trend to the file trend.grd. -V Selects verbose mode, which will send progress reports to stderr [Default runs "silently"]. -W If weight.grd exists, it will be read and used to solve a weighted least-squares problem. [Default: Ordinary least-squares fit.] If the robust option has been selected, the weights used in the robust fit will be written to weight.grd. REMARKS
The domain of x and y will be shifted and scaled to [-1, 1] and the basis functions are built from Legendre polynomials. These have a numerical advantage in the form of the matrix which must be inverted and allow more accurate solutions. NOTE: The model parameters listed with -V are Legendre polynomial coefficients; they are not numerically equivalent to the m#s in the equation described above. The descrip- tion above is to allow the user to match -N with the order of the polynomial surface. EXAMPLES
To remove a planar trend from hawaii_topo.grd and write result in hawaii_residual.grd, try grdtrend hawaii_topo.grd -N3 -Dhawaii_residual.grd To do a robust fit of a bicubic surface to hawaii_topo.grd, writing the result in hawaii_trend.grd and the weights used in hawaii_weight.grd, and reporting the progress, try grdtrend hawaii_topo.grd -Nr10 -Thawaii_trend.grd -Whawaii_weight.grd -V SEE ALSO
gmt(1gmt), grdfft(1gmt), grdfilter(1gmt) 1 Jan 2004 GRDTREND(l)
Check Out this Related Man Page
TREND2D(l) TREND2D(l) NAME
trend2d - Fit a [weighted] [robust] polynomial model for z = f(x,y) to xyz[w] data. SYNOPSIS
trend2d -F<xyzmrw> -Nn_model[r] [ xyz[w]file ] [ -Ccondition_# ] [ -H[nrec] ][ -I[confidence_level] ] [ -V ] [ -W ] [ -: ] [ -bi[s][n] ] [ -bo[s][n] ] DESCRIPTION
trend2d reads x,y,z [and w] values from the first three [four] columns on standard input [or xyz[w]file] and fits a regression model z = f(x,y) + e by [weighted] least squares. The fit may be made robust by iterative reweighting of the data. The user may also search for the number of terms in f(x,y) which significantly reduce the variance in z. n_model may be in [1,10] to fit a model of the following form (sim- ilar to grdtrend): m1 + m2*x + m3*y + m4*x*y + m5*x*x + m6*y*y + m7*x*x*x + m8*x*x*y + m9*x*y*y + m10*y*y*y. The user must specify -Nn_model, the number of model parameters to use; thus, -N4 fits a bilinear trend, -N6 a quadratic surface, and so on. Optionally, append r to perform a robust fit. In this case, the program will iteratively reweight the data based on a robust scale estimate, in order to converge to a solution insensitive to outliers. This may be handy when separating a "regional" field from a "resid- ual" which should have non-zero mean, such as a local mountain on a regional surface. -F Specify up to six letters from the set {x y z m r w} in any order to create columns of ASCII [or binary] output. x = x, y = y, z = z, m = model f(x,y), r = residual z - m, w = weight used in fitting. -N Specify the number of terms in the model, n_model, and append r to do a robust fit. E.g., a robust bilinear model is -N4r. OPTIONS
xyz[w]file ASCII [or binary, see -b] file containing x,y,z [w] values in the first 3 [4] columns. If no file is specified, trend2d will read from standard input. -C Set the maximum allowed condition number for the matrix solution. trend2d fits a damped least squares model, retaining only that part of the eigenvalue spectrum such that the ratio of the largest eigenvalue to the smallest eigenvalue is condition_#. [Default: condition_# = 1.0e06. ]. -H Input file(s) has Header record(s). Number of header records can be changed by editing your .gmtdefaults file. If used, GMT default is 1 header record. -I Iteratively increase the number of model parameters, starting at one, until n_model is reached or the reduction in variance of the model is not significant at the confidence_level level. You may set -I only, without an attached number; in this case the fit will be iterative with a default confidence level of 0.51. Or choose your own level between 0 and 1. See remarks section. -V Selects verbose mode, which will send progress reports to stderr [Default runs "silently"]. -W Weights are supplied in input column 4. Do a weighted least squares fit [or start with these weights when doing the iterative robust fit]. [Default reads only the first 3 columns.] -: Toggles between (longitude,latitude) and (latitude,longitude) input/output. [Default is (longitude,latitude)]. Applies to geo- graphic coordinates only. -bi Selects binary input. Append s for single precision [Default is double]. Append n for the number of columns in the binary file(s). [Default is 3 (or 4 if -W is set) input columns]. -bo Selects binary output. Append s for single precision [Default is double]. REMARKS
The domain of x and y will be shifted and scaled to [-1, 1] and the basis functions are built from Chebyshev polynomials. These have a numerical advantage in the form of the matrix which must be inverted and allow more accurate solutions. In many applications of trend2d the user has data located approximately along a line in the x,y plane which makes an angle with the x axis (such as data collected along a road or ship track). In this case the accuracy could be improved by a rotation of the x,y axes. trend2d does not search for such a rotation; instead, it may find that the matrix problem has deficient rank. However, the solution is computed using the generalized inverse and should still work out OK. The user should check the results graphically if trend2d shows deficient rank. NOTE: The model parameters listed with -V are Chebyshev coefficients; they are not numerically equivalent to the m#s in the equation described above. The description above is to allow the user to match -N with the order of the polynomial surface. The -Nn_modelr (robust) and -I (iterative) options evaluate the significance of the improvement in model misfit Chi-Squared by an F test. The default confidence limit is set at 0.51; it can be changed with the -I option. The user may be surprised to find that in most cases the reduction in variance achieved by increasing the number of terms in a model is not significant at a very high degree of confidence. For example, with 120 degrees of freedom, Chi-Squared must decrease by 26% or more to be significant at the 95% confidence level. If you want to keep iterating as long as Chi-Squared is decreasing, set confidence_level to zero. A low confidence limit (such as the default value of 0.51) is needed to make the robust method work. This method iteratively reweights the data to reduce the influence of outliers. The weight is based on the Median Absolute Deviation and a formula from Huber [1964], and is 95% efficient when the model residuals have an outlier-free normal distribution. This means that the influence of outliers is reduced only slightly at each iteration; consequently the reduction in Chi-Squared is not very significant. If the procedure needs a few iterations to successfully attenuate their effect, the significance level of the F test must be kept low. EXAMPLES
To remove a planar trend from data.xyz by ordinary least squares, try: trend2d data.xyz -Fxyr -N2 > detrended_data.xyz To make the above planar trend robust with respect to outliers, try: trend2d data.xzy -Fxyr -N2r > detrended_data.xyz To find out how many terms (up to 10) in a robust interpolant are significant in fitting data.xyz, try: trend2d data.xyz -N10r -I -V SEE ALSO
gmt(1gmt), grdtrend(1gmt), trend1d(1gmt) REFERENCES
Huber, P. J., 1964, Robust estimation of a location parameter, Ann. Math. Stat., 35, 73-101. Menke, W., 1989, Geophysical Data Analysis: Discrete Inverse Theory, Revised Edition, Academic Press, San Diego. 1 Jan 2004 TREND2D(l)